Publications

Every year, our UTHPC center contributes to the publication of dozens of research articles. Below you can see a list of publications where our computing resources have been used for research.

Currently we have 401 publication in our database.

2024 | Biology
Transcriptome analysis reveals involvement of thiopurine S-methyltransferase in oxidation-reduction processes.

Šmid, Alenka; Štajdohar, Miha; Milek, Miha; Urbančič, Dunja; Karas Kuželički, Nataša; Tamm, Riin; Metspalu, Andres; Mlinarič-Raščan, Irena (2024). European Journal of Pharmaceutical Sciences, 192, 106616. DOI: 10.1016/j.ejps.2023.106616.

2023 | Medical science
Pre-vaccination prevalence of type-specific human papilloma virus infection by grade of cervical cytology in Estonia.

Uusküla, Anneli; Oja, Marek; Tamm, Sirli; Tisler, Anna; Laanpere, Made; Padrik, Lee; Nygard, Mari; Reisberg, Sulev; Vilo, Jaak; Kolde, Raivo (2023). JAMA Network Open, 6 (2). DOI: 10.1001/jamanetworkopen.2022.54075.
2023 | Physics
Laser-based analytical techniques in cultural heritage science - Tutorial review.

Vahur, Signe; Treshchalov, Alexey; Lohmus, Rynno; Teearu, Anu; Niman, Käthi; Hiiop, Hilkka; Kikas, Jaak; Leito, Ivo (2023). Analytica Chimica Acta, 342107. DOI: 10.1016/j.aca.2023.342107.
2023 | Chemistry
Modelling of Chirogenesis. Best Practices and Applications.

Burk, Peeter; Burk, Jaanus (2023). In: Victor Borovkov, Riina Aav (Ed.). Chirogenesis in Chemical Science, pages 429−465. New Jersey: World Scientific. DOI: 10.1142/9789811259227_0008.
2023 | Biology
The genomic echoes of the last Green Sahara on the Fulani and Sahelian people.

D’Atanasio, Eugenia; Risi, Flavia; Ravasini, Francesco; Montinaro, Francesco; Hajiesmaeil, Mogge; Bonucci, Biancamaria; Pistacchia, Letizia; Amoako-Sakyi, Daniel; Bonito, Maria; Onidi, Sara; Colombo, Giulia; Semino, Ornella; Destro Bisol, Giovanni; Anagnostou, Paolo; Metspalu, Mait; Tambets, Kristiina; Trombetta, Beniamino; Cruciani, Fulvio (2023). Current Biology, 33 (24). DOI: 10.1016/j.cub.2023.10.075.
2023 | Chemistry
Comparison of two azobenzene-based amino acid derivatization reagents for LC- MS/MS analysis in positive and negative ESI modes.

Flores, Ernesto de Jesus Zapata; Bui, Nguyen Kim Ngan; Selberg, Sigrid; Herodes, Koit; Leito, Ivo (2023). Talanta, 252, 123803. DOI: 10.1016/j.talanta.2022.123803.
2023 | Chemistry
Solubility of Mono-Aminoacridines.

Ghiami-Shomami, Ali; Tshepelevitsh, Sofja; Tammekivi, Eliise; Ilisson, Mihkel; Mastitski, Anton; Kütt, Agnes; Toom, Lauri; Leito, Ivo (2023). ChemistrySelect, 8 (29), e202300835. DOI: 10.1002/slct.202300835.
2023 | Medical science
Nationwide health, socio-economic and genetic predictors of COVID-19 vaccination status in Finland.

Hartonen, Tuomo; Jermy, Bradley; Sõnajalg, Hanna; Vartiainen, Pekka; Krebs, Kristi; Vabalas, Andrius; FinnGen; Estonian Biobank Research Team; Leino, Tuija; Nohynek, Hanna; Sivelä, Jonas; Mägi, Reedik; Daly, Mark; Ollila, Hanna M; Milani, Lili; Perola, Markus; Ripatti, Samuli; Ganna, Andrea (2023). Nature Human Behaviour, 7 (7). DOI: 10.1038/s41562-023-01591-z.
2023 | Medical science
Precise, Genotype-First Breast Cancer Prevention: Experience With Transferring Monogenic Findings From a Population Biobank to the Clinical Setting.

Jurgens, Hannes; Roht, Laura; Leitsalu, Liis; Noukas, Margit; Palover, Marili; Nikopensius, Tiit; Reigo, Anu; Kals, Mart; Kallak, Kersti; Kutner, Riina; Valvere, Vahur; Laidre, Piret; Toome, Kadri; Rekker, Kadri; Tooming, Mikk; Murumets, Ulle; Kahre, Tiina; Kruuv-Kao, Krista; Ounap, Katrin; Padrik, Peeter … Tonisson, Neeme (2023). Frontiers in Genetics, 13, 881100. DOI: 10.3389/fgene.2022.881100
2023 | Chemistry
Ab Initio Calculation of Thermodynamic Functions for CO2 Adsorption in Metal-Organic Frameworks: Entropic Effects of Lateral Interactions.

Koppel, Ivar, Kaido Sillar (2023). The Journal of Physical Chemistry C, 127 (24), 11712−11719. DOI: 10.1021/acs.jpcc.3c02234.
2023 | NLP
Distilling Estonian Text Domains for Production- Oriented Machine Translation.

Korotkova, Elizaveta; Fishel, Mark (2023). In: Proceedings of the 24th Nordic Conference on Computational Linguistics, pages 772−781. ACL Anthology.
2023 | Medical science
Common clinical blood and urine biomarkers for ischemic stroke: an Estonian Electronic Health Records database study.

Kurvits, Siim; Harro, Ainika; Reigo, Anu; Ott, Anne; Laur, Sven; Särg, Dage; Tampuu, Ardi; Alasoo, Kaur; Vilo, Jaak; Milani, Lili; Haller, Toomas (2023). European Journal of Medical Research, 28 (1), 133. DOI: 10.1186/s40001-023-01087-6.
2023 | NLP
Translated Benchmarks Can Be Misleading: the Case of Estonian Question Answering.

Kuulmets, Hele-Andra; Fishel, Mark (2023). In: Proceedings of the 24th Nordic Conference on Computational Linguistics (NoDaLiDa), pages 710−716. Torshavn, Faroe Islands. University of Tartu Library.
2023 | NLP
Eesti keele õigekirja- ja grammatikakontroll: mudelite võrdlus ja kombineerimine.

Luhtaru, Agnes; Fišel, Mark; Liin, Krista; Allkivi-Metsoja, Kais; Kippar, Jaagup (2023). 20th Annual Conference of Applied Linguistics, pages 16−18. Eesti Rakenduslingvistika Ühing.
2023 | NLP
Automatic Transcription for Estonian Children’s Speech.

Luhtaru, Agnes; Jaaska, Rauno; Kruusamäe, Karl; Fishel, Mark (2023). In: Proceedings of the 24th Nordic Conference on Computational Linguistics (NoDaLiDa), pages 705−709. Torshavn, Faroe Islands. University of Tartu Library.
2023 | Medical science
From phenotype to endotype: preclinical validation of ROS-cGMPopathies in the Estonian Biobank.

Nogales, Cristian; Kronberg, Jaanika; Petraina, Alexandra; Pachado, Mayra Pacheco; Weerts, Jerremy; Aizpurua, Arantxa Barandiaran; van Empel, Vanessa; Nelis, Mari; Milani, Lili; Esko, Tonu; Metspalu, Andres; Magi, Reedik; Schmidt, Harald H. H. W. (2023). Journal of Translational Medicine, 21 (Suppl 1). DOI: 10.1186/s12967-022-03800-1
2023 | Medical science
Untargeted metabolomics profiling in three cohorts indicates lipid imbalance in individuals with epilepsy.

Oja, Kaisa T; Ilisson, Mihkel; Reinson, Karit; Muru, Kai; Reimand, Tiia; Peterson, Hedi; Fishman, Dmytro; Esko, Tõnu; Haller, Toomas; Kronberg, Jaanika; Wojcik, Monica H.; Kennedy, Adam D.; Sommerville, Laura; Michelotti, Gregory; O’Donnell-Luria, Anne; Õiglane-Šlik, Eve; Pajusalu, Sander; Õunap, Katrin (2023). Journal of Inherited Metabolic Disease, 46, pages 463−464. (). DOI: 10.1002/jimd.12668.
2023 | Medical science
Untargeted metabolomics profiling in pediatric patients and adult populations indicates a connection between lipid imbalance and epilepsy.

Oja, Kaisa T; Ilisson, Mihkel; Reinson, Karit; Muru, Kai; Reimand, Tiia; Peterson, Hedi; Fishman, Dmytro; Esko, Tõnu; Haller, Toomas; Kronberg, Jaanika; Wojcik, Monica H; Kennedy, Adam; Michelotti, Gregory; O’Donnell-Luria, Anne; Õiglane-Šlik, Eve; Pajusalu, Sander; Õunap, Katrin (2023). medRxiv. Preprint. DOI: 10.1101/2023.03.29.23287640.
2023 | Medical science
Transforming Estonian health data to the Observational Medical Outcomes Partnership (OMOP) Common Data Model: lessons learned.

Oja, Marek; Tamm, Sirli; Mooses, Kerli; Pajusalu, Maarja; Talvik, Harry-Anton; Ott, Anne; Laht, Marianna; Malk, Maria; Lõo, Marcus; Holm, Johannes; Haug, Markus; Šuvalov, Hendrik; Särg, Dage; Vilo, Jaak; Laur, Sven; Kolde, Raivo; Reisberg, Sulev (2023). JAMIA Open, 6 (4), ooad100. DOI: 10.1093/jamiaopen/ooad100.
2023 | Chemistry
Tris(benzophenoneimino)phosphane and Related Compounds.

Pikma, Marta-Lisette; Lõkov, Märt; Tshepelevitsh, Sofja; Saame, Jaan; Haljasorg, Tõiv; Toom, Lauri; Selberg, Sigrid; Leito, Ivo; Kütt, Agnes (2023). European Journal of Organic Chemistry, 26 (28), e202300453. DOI: 10.1002/ejoc.202300453.
2023 | Computer science
Metadata Improves Segmentation Through Multitasking Elicitation.

Plutenko, Iaroslav; Papkov, Mikhail; Palo, Kaupo; Parts, Leopold; Fishman, Dmytro (2023). In: Domain Adaptation and Representation Transfer, pages 147-155. DOI: 10.48550/arXiv.2308.09411.
2023 | Chemistry
The Unified Redox Scale for All Solvents: Consistency and Gibbs Transfer Energies of Electrolytes from their Constituent Single Ions.

Radtke, Valentin; Priester, Denis; Heering, Agnes; Mueller, Carina; Koslowski, Thorsten; Leito, Ivo; Krossing, Ingo (2023). Chemistry, 29, e202300609. DOI: 10.1002/chem.202300609.
2023 | Medical science
Endometrial cancer diagnostic and prognostic algorithms based on proteomics, metabolomics, and clinical data: a systematic review.

Romano, Andrea; Rižner, Tea L; Werner, Henrica M J; Semczuk, Andrzej; Lowy, Camille; Schröder, Christoph; Griesbeck, Anne; Adamski, Jerzy; Fishman, Dmytro; Tokarz, Janina (2023). Frontiers in Oncology, 13, 1120178. DOI: 10.3389/fonc.2023.1120178.
2023 | Medical science
Kroonilise neeruhaiguse levimus Eesti e-tervise andmete alusel.

Rosenberg, Mai; Thetloff, Maie; Tamm, Sirli; Kuusk, Krista; Reisberg, Sulev; Vilo, Jaak (2023). Eesti Arst, 102 (5), 263−276.
2023 | Medical science
Overlap of Genetic Loci for Central Serous Chorioretinopathy With Age-Related Macular Degeneration.

Rämö, Joel T; Abner, Erik; van Dijk, Elon H C; Wang, Xin; Brinks, Joost; Nikopensius, Tiit; Nõukas, Margit; Marjonen, Heidi; Silander, Kaisa; Jukarainen, Sakari; Kiiskinen, Tuomo; Choi, Seung Hoan; Kajanne, Risto; Mehtonen, Juha; Palta, Priit; Lubitz, Steven A; Kaarniranta, Kai; Sobrin, Lucia; Kurki, Mitja; Yzer, Suzanne … (2023). JAMA Ophthalmology, 141 (7), 697. DOI: 10.1001/jamaophthalmol.2023.0706.
2023 | NLP
Neural Text-to-Speech Synthesis for Võro.

Rätsep, Liisa; Fishel, Mark (2023). In: Proceedings of the 24th Nordic Conference on Computational Linguistics (NoDaLiDa), pages 723−727. Torshavn, Faroe Islands. University of Tartu Library.
2023 | Medical science
Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets.

Zhao, Jing Hua; Stacey, David; Eriksson, Niclas; Macdonald-Dunlop, Erin; Hedman, Åsa K; Kalnapenkis, Anette; Enroth, Stefan; Cozzetto, Domenico; Digby-Bell, Jonathan; Marten, Jonathan; Folkersen, Lasse; Herder, Christian; Jonsson, Lina; Bergen, Sarah E; Gieger, Christian; Needham, Elise J; Surendran, Praveen; Metspalu, Andres; Milani, Lili; Mägi, Reedik … (2023). Nature Immunology, 24, 1540−1551. DOI: s41590-023-01588-w.
2023 | Chemistry
Theoretical Study on Fluorinated Derivatives of Sulfolane, Cyclopentanone, and Gamma-Butyrolactone.

Tshepelevitsh, Sofja, Kütt, Agnes; Leito, Ivo (2023). Molecules, 28 (23). DOI: 10.3390/molecules28237770.
2023 | Earth science
Modeling forest landscape futures: Full scale simulation of realistic socioeconomic scenarios in Estonia.

Kaasik, Ants; Kont, Raido; Lõhmus, Asko (2023). PLoS One. 2023, 18, (11), e0294650. DOI: 10.1371/journal.pone.0294650.
2023 | Chemistry
NMR shift prediction from small data quantities.

Rull, Herman; Fischer, Markus; Kuhn, Stefan (2023). J Cheminform, 15 (1). DOI: 10.1186/s13321-023-00785-x.
2023 | Biology
eQTL Catalogue 2023: New datasets, X chromosome QTLs, and improved detection and visualisation of transcript-level QTLs.

Kerimov, Nurlan; Tambets, Ralf; Hayhurst, James D; Rahu, Ida; Kolberg, Peep; Raudvere, Uku; Kuzmin, Ivan; Chowdhary, Anshika; Vija, Andreas; Teras, Hans J; Kanai, Masahiro; Ulirsch, Jacob; Ryten, Mina; Hardy, John; Guelfi, Sebastian; Trabzuni, Daniah; Kim-Hellmuth, Sarah; Rayner, William; Finucane, Hilary; Peterson, Hedi; Mosaku, Abayomi; Parkinson, Helen; Alasoo, Kaur (2023). PLoS Genet, 19, (9), e1010932. DOI: 10.1371/journal.pgen.1010932.
2023 | Medical science
Correction: Genome-wide meta-analysis identifies novel loci conferring risk of acne vulgaris.

Teder-Laving, Maris; Kals, Mart; Reigo, Anu; Ehin, Riin; Objärtel, Telver; Vaht, Mariliis; Nikopensius, Tiit; Metspalu, Andres; Kingo, Külli (2023). European Journal of Human Genetics. DOI: 10.1038/s41431-023-01366-0.
2023 | Medical science
Genome-wide meta-analysis identifies novel loci conferring risk of acne vulgaris.

Teder-Laving, Maris; Kals, Mart; Reigo, Anu; Ehin, Riin; Objärtel, Telver; Vaht, Mariliis; Nikopensius, Tiit; Metspalu, Andres; Kingo, Külli (2023). European Journal of Human Genetics. DOI: 10.1038/s41431-023-01326-8.
2023 | Medical science
Prevaccination Prevalence of Type-Specific Human Papillomavirus Infection by Grade of Cervical Cytology in Estonia.

Uusküla, Anneli; Oja, Marek; Tamm, Sirli; Tisler, Anna; Laanpere, Made; Padrik, Lee; Nygard, Mari; Reisberg, Sulev; Vilo, Jaak; Kolde, Raivo (2023). JAMA Network Open, 6 (2), e2254075. DOI: 10.1001/jamanetworkopen.2022.54075
2023 | NLP
Machine Translation for Low-resource Finno-Ugric Languages.

Yankovskaya, Lisa; Tars, Maali; Tättar, Andre; Fishel, Mark (2023). In: Proceedings of the 24th Nordic Conference on Computational Linguistics, pages 762−771. Torshavn, Faroe Islands. University of Tartu Library.
2023 | Biology
Long-range regulatory effects of Neandertal DNA in modern humans.

Yermakovich, Danat; Pankratov, Vasili; Vosa, Urmo; Yunusbayev, Bayazit; Metspalu, Andres; Nelis, Mari; Milani, Lili; Magi, Reedik; Esko, Tonu; Dannemann, Michael; Ramachandran, Sohini (2023). Genetics, 223 (3), iyac188. DOI: 10.1093/genetics/iyac188

2022 | Medical science
Gut metagenome associations with extensive digital health data in a volunteer-based Estonian microbiome cohort.

Aasmets, Oliver; Krigul, Kertu L; Lüll, Kreete; Metspalu, Andres; Org, Elin (2022). Nature Communications, 13 (1), 1−11. DOI: 10.1038/s41467-022-28464-9.
2022 | Biology
Global patterns in endemicity and vulnerability of soil fungi.

Tedersoo, Leho; Mikryukov, Vladimir; Zizka, Alexander; Bahram, Mohammad; Hagh-Doust, Niloufar; Anslan, Sten; Prylutskyi, Oleh; Delgado-Baquerizo, Manuel; Maestre, Fernando T; … Abarenkov, Kessy (2022). Global Change Biology, 28 (22), 6696−6710. DOI: 10.1111/gcb.16398.
2022 | Medical science
SARS-CoV-2 dual infection with Delta and Omicron variants in an immunocompetent host: a case report.

Abroi, Aare; Gerst Talas, Ulvi; Pauskar, Merit; Shablinskaja, Arina; Reisberg, Tuuli; Niglas, Heiki; Pall, Taavi; Nelis, Mari; Tagen, Ingrid; Soodla, Pilleriin; Lutsar, Irja; Huik, Kristi (2022). International Journal of Infectious Diseases, 124, 41−44. DOI: 10.1016/j.ijid.2022.08.027.
2022 | Medical science
Genetic variants that edit risk of immune diseases.

Alasoo, Kaur (2022). Nature, 608, 479−480. DOI: 10.1038/d41586-022-01641-y.
2022 | Chemistry
CO2 reduction to formate on an affordable bismuth metal-organic framework based catalyst.

Ávila-Bolívar, Beatriz; Cepitis, Ritums; Alam, Mahboob; Assafrei, Jürgen-Martin; Ping, Kefeng; Aruväli, Jaan; Kikas, Arvo; Kisand, Vambola; Vlassov, Sergei; Käärik, Maike; Leis, Jaan; Ivaništšev, Vladislav; Starkov, Pavel; Montiel, Vicente; Solla-Gullón, José; Kongi, Nadezda (2022). Journal of CO2 Utilization, 59, 101937. DOI: 10.1016/j.jcou.2022.101937.
2022 | Biology
Structure and function of the soil microbiome underlying N2O emissions from global wetlands.

Bahram, Mohammad; Espenberg, Mikk; Pärn, Jaan; Lehtovirta-Morley, Laura; Anslan, Sten; Kasak, Kuno; Kõljalg, Urmas; Liira, Jaan; Maddison, Martin; Moora, Mari; Niinemets, Ülo; Öpik, Maarja; Pärtel, Meelis; Soosaar, Kaido; Zobel, Martin; Hildebrand, Falk; Tedersoo, Leho; Mander, Ülo (2022). Nature Communications, 13, 1430. DOI: 10.1038/s41467-022-29161-3.
2022 | Medical science
Immune disease variants modulate gene expression in regulatory CD4+ T cells.

Bossini-Castillo, Lara; Glinos, Dafni A.; Kunowska, Natalia; Golda, Gosia; Lamikanra, Abigail A.; Spitzer, Michaela; Soskic, Blagoje; Cano-Gamez, Eddie; Smyth, Deborah J.; Cattermole, Claire; Alasoo, Kaur; Mann, Alice; Kundu, Kousik; Lorenc, Anna; Soranzo, Nicole; Dunham, Ian; Roberts, David J.; Trynka, Gosia (2022). Cell Genomics, 2 (4), 100117. DOI: 10.1016/j.xgen.2022.100117.
2022 | NLP
Cross-lingual Similarity of Multilingual Representations Revisited.

Del, Maksym; Fishel, Mark (2022). In: Proceedings of the 2nd Conference of the Asia-Pacific Chapter of the Association for Computational Linguistics and the 12th International Joint Conference on Natural Language Processing (Volume 1: Long Papers), pages 185−195. Association for Computational Linguistics. DOI: https://arxiv.org/abs/2212.01924.
2022 | NLP
Similarity of Sentence Representations in Multilingual LMs: Resolving Conflicting Literature and a Case Study of Baltic Languages.

Del, Maksym; Fishel, Mark; (2022). Baltic Journal of Modern Computing, 10 (3), 337−347. DOI: 10.22364/bjmc.2022.10.3.07.
2022 | NLP
Language resources and tools for Livonian.

Ernštreits, Valts; Fišel, Mark; Rikters, Matīss; Tomingas, Marili; Tuisk, Tuuli (2022). Journal of Estonian and Finno-Ugric Linguistics, 13 (1), 13−36. DOI: 10.12697/jeful.2022.13.1.01.
2022 | Medical science
Heterozygote selection against ID alleles may shape the landscape of autosomal-recessive pathogenic variants in European populations.

Fridman, Hila; Yntema, Helger G.; Magi, Reedik; Andreson, Reidar; Metspalu, Andres; Mezzavila, Massimo; Tyler-Smith, Chris; Xue, Yali; Carmi, Shai; Levy-Lahad, Ephrat; Gilissen, Christian; Brunner, Han G. (2022). European Journal of Human Genetics, 30 (SUPPL 1, 1), 537−538.
2022 | Medical science
BIRC6 modifies risk of invasive bacterial infection in Kenyan children.

Gilchrist, James; Kariuki, Silvia N; Watson, James A; Band, Gavin; Uyoga, Sophie; Ndila, Carolyne M; Mturi, Neema; Mwarumba, Salim; Mohammed, Shebe; Mosobo, Moses; Alasoo, Kaur; Rockett, Kirk A; Mentzer, Alexander J; Kwiatkowski, Dominic P; Hill, Adrian VS; Maitland, Kathryn; Scott, J Anthony G; Williams, Thomas N (2022). eLife, 11, e77461. DOI: 10.7554/eLife.77461.
2022 | Medical science
An invasive Haemophilus influenzae serotype b infection in an Anglo-Saxon plague victim.

Guellil, Meriam; Keller, Marcel; Dittmar, Jenna M.; Inskip, Sarah A.; Cessford, Craig; Solnik, Anu; Kivisild, Toomas; Metspalu, Mait; Robb, John E.; Scheib, Christiana L. (2022). Genome Biology, 23 (1). DOI: 10.1186/s13059-021-02580-z.
2022 | Biology
Ancient herpes simplex 1 genomes reveal recent viral structure in Eurasia.

Guellil, Meriam; van Dorp, Lucy; Inskip, Sarah A.; Dittmar, Jenna M.; Saag, Lehti; Tambets, Kristiina; Hui, Ruoyun; Rose, Alice; D’Atanasio, Eugenia; Kriiska, Aivar; Varul, Liivi; Koekkelkoren, A. M. H. C.; Goldina, Rimma D.; Cessford, Craig; Solnik, Anu; Metspalu, Mait; Krause, Johannes; Herbig, Alexander; Robb, John E.; Houldcroft, Charlotte J. Scheib, Christiana L. (2022). Science Advances, 8 (30), eabo4435. DOI: 10.1126/sciadv.abo4435.
2022 | Medical science
Precise, Genotype-First Breast Cancer Prevention: Experience With Transferring Monogenic Findings From a Population Biobank to the Clinical Setting.

Jurgens, Hannes; Roht, Laura; Leitsalu, Liis; Noukas, Margit; Palover, Marili; Nikopensius, Tiit; Reigo, Anu; Kals, Mart; Kallak, Kersti; Kuetner, Riina; Budrikas, Kai; Kuusk, Saskia; Valvere, Vahur; Laidre, Piret; Toome, Kadri; Rekker, Kadri; Tooming, Mikk; Kahre, Tiina; Kruuv-Kao, Krista; ounap, Katrin … Tonisson, Neeme (2022). Frontiers in Genetics, 13, 881100. DOI: 10.3389/fgene.2022.881100.
2022 | Medical science
Editorial: Can population health be personalized? Estonia and Finland as examples.

Kaariainen, Helena; Metspalu, Andres; Perola, Markus (2022). Frontiers in Genetics, 13, 1051085. DOI: 10.3389/fgene.2022.1051085.
2022 | Biology
Episodes of diversification and isolation in Island Southeast Asian and Near Oceanian male lineages.

Karmin, Monika; Flores, Rodrigo; Saag, Lauri; Hudjashov, Georgi; Brucato, Nicolas; Crenna- Darusallam Chelzie, Larena Maximilian, Endicott Phillip, Jakobsson Mattias, Lansing Stephen, Sudoyo Herawati, Leavesley Matthew, Metspalu Mait, Ricaut François-Xavier, Cox Murray (2022). Molecular Biology and Evolution, 39 (3), msac045. DOI: 10.1093/molbev/msac045.
2022 | NLP
Findings of the 2022 Conference on Machine Translation (WMT22).

Kocmi, Tom; Bawden, Rachel; Bojar, Ondrej; Dvorkovich, Anton; Federmann, Christian; Fishel, Mark; Gowda, Thamme; Graham, Yvette; Grundkiewicz, Roman; Haddow, Barry; Knowles, Rebecca; Koehn, Philipp; Monz, Christof; Morishita, Makoto; Nagata, Masaaki; Nakazawa, Toshiaki; Novak, Michal; Popel, Martin; Popovic, Maja (2022). In: Proceedings of the Seventh Conference on Machine Translation (WMT), pages 1−45. Association for Computational Linguistics.
2022 | NLP
Estonian Language Understanding: a Case Study on the COPA Task.

Kuulmets, Hele-Andra; Tättar, Andre; Fišel, Mark (2022). Baltic Journal of Modern Computing, 10, 470−480. DOI: 10.22364/bjmc.2022.10.3.19.
2022 | Medical science
Trajectories: a framework for detecting temporal clinical event sequences from health data standardized to the Observational Medical Outcomes Partnership (OMOP) Common Data Model.

Künnapuu, Kadri; Ioannou, Solomon; Ligi, Kadri; Kolde, Raivo; Laur, Sven; Vilo, Jaak; Rijnbeek, Peter R; Reisberg, Sulev (2022). JAMIA Open, 5 (1), 1−11. DOI: 10.1093/jamiaopen/ooac021.
2022 | Chemistry
Quantifying Acidity in Heterogeneous Systems: Biphasic pKa Values.

Leesment, Andre; Selberg, Sigrid; Tammiste, Merili; Vu, Anh H; Nguyen, Thuong H; Taylor-King, Luke; Leito, Ivo (2022). Analytical Chemistry, 94 (9), 4059−4064. DOI: 10.1021/acs.analchem.1c05510.
2022 | Medical science
Lessons learned during the process of reporting individual genomic results to participants of a population-based biobank.

Leitsalu, Liis; Reigo, Anu; Palover, Marili; Nikopensius, Tiit; Lall, Kristi; Krebs, Kristi; Reisberg, Sulev; Magi, Reedik; Kals, Mart; Alavere, Helene; Noukas, Margit; Kolk, Anneli; Normet, Ivi; Tammesoo, Mari-Liis; Kaarik, Ene; Puusepp, Mairo; Metsalu, Kristjan; Allik, Annely; Milani, Lili; Fischer, Krista … Metspalu, Andres (2022). European Journal of Human Genetics, 31 (9). DOI: 10.1038/s41431-022-01196-6.
2022 | Medical science
Multi-ancestry genetic study of type 2 diabetes highlights the power of diverse populations for discovery and translation.

Mahajan, Anubha; Spracklen, Cassandra N; Zhang, Weihua; Ng, Maggie C Y; Petty, Lauren E; Kitajima, Hidetoshi; Yu, Grace Z; RĆ¼eger, Sina; Speidel, Leo; Kim, Young Jin; Horikoshi, Momoko; Mercader, Josep M; Taliun, Daniel; Moon, Sanghoon; Kwak, Soo-Heon; Robertson, Neil R; Rayner, Nigel W; Loh, Marie; Kim, Bong-Jo; Chiou, Joshua … Morris, Andrew P. (2022). Nature Genetics, 54 (5), 560−572. DOI: 10.1038/s41588-022-01058-3.
2022 | Biology
Ancestral genomic contributions to complex traits in contemporary Europeans.

Marnetto, Davide; Pankratov, Vasili; Mondal, Mayukh; Montinaro, Francesco; Pärna, Katri; Vallini, Leonardo; Molinaro, Ludovica; Saag, Lehti; Loog, Liisa; Montagnese, Sara; Costa, Rodolfo; Metspalu, Mait; Eriksson, Anders; Pagani, Luca (2022). Current Biology, 32 (6). DOI: 10.1016/j.cub.2022.01.046.
2022 | Biology
Unraveling a fine-scale high genetic heterogeneity and recent continental connections of an Arabian Peninsula population.

Eaaswarkhanth, Muthukrishnan; Pathak, Ajai K.; Ongaro, Linda; Montinaro, Francesco; Hebbar, Prashantha; Alsmadi, Osama; Metspalu, Mait; Al-Mulla, Fahd; Thanaraj, Thangavel Alphonse (2022). European Journal of Human Genetics, 30. DOI: 10.1038/s41431-021-00861-6.
2022 | Biology
Genetic architecture of gene regulation in Indonesian populations identifies QTLs associated with global and local ancestries.

Natri, Heini M.; Hudjashov, Georgi; Jacobs, Guy; Kusuma, Pradiptajati; Saag, Lauri; Darusallam, Chelzie Crenna; Metspalu, Mait; Sudoyo, Herawati; Cox, Murray P.; Romero, Irene Gallego; Banovich, Nicholas E. (2022). The American Journal of Human Genetics, 109 (1), 50−65. DOI: 10.1016/j.ajhg.2021.11.017.
2022 | Medical science
Genetic and modifiable risk factors combine multiplicatively in common disease.

Pang, Shichao; Yengo, Loic; Nelson, Christopher P.; Bourier, Felix; Zeng, Lingyao; Li, Ling; Kessler, Thorsten; Erdmann, Jeanette; Magi, Reedik; Lall, Kristi; Metspalu, Andres; Mueller-Myhsok, Bertram; Samani, Nilesh J.; Visscher, Peter M.; Schunkert, Heribert (2022). Clinical Research in Cardiology, 112 (2). DOI: 10.1007/s00392-022-02081-4.
2022 | Medical science
A first update on mapping the human genetic architecture of COVID-19.

Pathak, Gita A; Polimanti, Renato; Karjalainen, Juha; Daly, Mark; Ganna, Andrea; Daly, Mark J; Stevens, Christine; Kanai, Masahiro; Liao, Rachel G; Trankiem, Amy; Balaconis, Mary K; Nguyen, Huy; Solomonson, Matthew; Veerapen, Kumar; Ripatti, Samuli; Nkambul, Lindo; Bryant, Sam; Sankaran, Vijay G; Neale, Benjamin M; Karczewski, Konrad J; … Biesecker, Les (2022). Nature, 608 (7921), E1−E10. DOI: 10.1038/s41586-022-04826-7.
2022 | Medical science
Spectrum and frequency of CHEK2 variants in breast cancer affected and general population in the Baltic states region, initial results and literature review.

Pavlovica, Kristine; Irmejs, Arvids; Noukas, Margit; Palover, Marili; Kals, Mart; Tonisson, Neeme; Metspalu, Andres; Gronwald, Jacek; Lubinski, Jan; Murmane, Daiga; Kalnina, Agnese; Loza, Peteris; Maksimenko, Jelena; Trofimovics, Genadijs; Subatniece, Signe; Daneberga, Zanda; Miklasevics, Edvins; Gardovskis, Janis (2022). European Journal of Medical Genetics, 65 (5), 104477. DOI: 10.1016/j.ejmg.2022.104477.
2022 | Chemistry
Measurements and Utilization of Consistent Gibbs Energies of Transfer of Single Ions: Towards a Unified Redox Potential Scale for All Solvents.

Radtke, Valentin; Gebel, Niklas; Priester, Denis; Ermantraut, Andreas; Baeuerle, Monika; Himmel, Daniel; Stroh, Regina; Koslowski, Thorsten; Leito, Ivo; Krossing, Ingo (2022). Chemistry - A European Journal, e202200509. DOI: 10.1002/chem.202200509.
2022 | Chemistry
Novel Lipophilic Fluorophores with Highly Acidity-Dependent Two-Photon Response.

Rammo, Matt; Trummal, Aleksander; Uudsemaa, Merle; Pahapill, Juri; Petritsenko, Katrin; Sildoja, Meelis-Mait; Stark, Charles W.; Selberg, Sigrid; Leito, Ivo; Palmi, Kirsti; Adamson, Jasper; Rebane, Aleksander (2022). Chemistry - A European Journal, 28 (8). DOI: 10.1002/chem.202103707.
2022 | Physics
Chlorophyll spectroscopy: conceptual basis, modern high-resolution approaches, and current challenges.

Reimers, Jeffrey R.; Rätsep, Margus; Linnanto, Juha Matti; Freiberg, Arvi (2022). Proceedings of the Estonian Academy of Sciences, 71 (2), 127−164. DOI: 10.3176/proc.2022.2.04.
2022 | NLP
Machine Translation for Livonian: Catering to 20 Speakers.

Rikters, Matiss; Tomingas, Marili; Tuisk, Tuuli; Ernštreits, Valts; Fishel, Mark (2022). In: Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics, pages 508−514. Association for Computational Linguistics.
2022 | Biology
DNA barcoding of fungal specimens using PacBio long-read high-throughput sequencing.

Runnel, Kadri; Abarenkov, Kessy; Copot, Ovidiu; Mikryukov, Vladimir; Kõljalg, Urmas; Saar, Irja; Tedersoo, Leho (2022). Molecular Ecology Resources, 22 (8), 2871−2879. DOI: 10.1111/1755- 0998.13663.
2022 | NLP
Estonian Text-to-Speech Synthesis with Non-autoregressive Transformers.

Rätsep, Liisa; Lellep, Rasmus; Fishel, Mark (2022). Baltic Journal of Modern Computing, 10 (3), 447−456. DOI: 10.22364/bjmc.2022.10.3.17.
2022 | Chemistry
One Hundred Carboxylate Receptors.

Rüütel, Alo; Tshepelevitsh, Sofja; Leito, Ivo (2022). The Journal of Organic Chemistry, 87 (21), 14186−14193. DOI: 10.1021/acs.joc.2c01725.
2022 | Biology
Additions to Dendrodacrys and outline of taxa with branched hyphidia in Dacrymycetes (Basidiomycota).

Savchenko, Anton; Zamora, Juan C; Alvarenga, Renato; Kõljalg, Urmas; Miettinen, Otto (2022). Fungal Systematics and Evolution, 10, 103−126. DOI: 10.3114/fuse.2022.10.04.
2022 | Medical science
A common founder effect of the splice site variant c.-23+1G > A in GJB2 gene causing autosomal recessive deafness 1A (DFNB1A) in Eurasia.

Solovyev, Aisen, V; Kushniarevich, Alena; Bliznetz, Elena; Bady-Khoo, Marita; Lalayants, Maria R; Markova, Tatiana G; Minarik, Gabriel; Kadasi, L’udevit; Metspalu, Ene; Pshennikova, Vera G; Teryutin, Fedor M; Khusnutdinova, Elza K; Poliakov, Alexander; Metspalu, Mait; Posukh, Olga L; Barashkov, Nikolay A; Fedorova, Sardana A (2022). Human Genetics, 141 (3-4). DOI: 10.1007/s00439-021-02405-w.
2022 | Physics
On‐off‐on Control of Molecular Inversion Symmetry via Multi‐stage Protonation: Elucidating Vibronic Laporte Rule.

Stark, Charles W; Rammo, Matt; Trummal, Aleksander; Uudsemaa, Merle; Pahapill, Juri; Sildoja, Meelis-Mait; Tshepelevitsh, Sofja; Leito, Ivo; Young, David C; Szymański, Bartosz; Vakuliuk, Olena; Gryko, Daniel T; Rebane, Aleksander (2022). Angewandte Chemie International Edition, 61 (51), e202212581. DOI: 10.1002/anie.202212581.
2022 | Earth science
Striped texture of submesoscale fields in the northeastern Baltic Proper: Results of very high-resolution modelling for summer season.

Zhurbas, Victor; Väli, Germo; Kuzmina, Natalia (2022). Oceanologia, 64 (1), 1−21. DOI: 10.1016/j.oceano.2021.08.003.
2022 | Computer science
A Survey of End-to-End Driving: Architectures and Training Methods.

Tampuu, Ardi; Matiisen, Tambet; Semikin, Maksym; Fishman, Dmytro; Muhammad, Naveed (2022). IEEE Transactions on Neural Networks and Learning Systems, 33 (4), 1364−1384. DOI: 10.1109/TNNLS.2020.3043505.
2022 | NLP
Cross-lingual Transfer from Large Multilingual Translation Models to Unseen Under-resourced Languages.

Tars, Maali; Tättar, Andre; Fishel, Mark (2022). Baltic Journal of Modern Computing, 10 (3), 435−446. DOI: 10.22364/bjmc.2022.10.3.16.
2022 | Biology
Global patterns in endemicity and vulnerability of soil fungi.

Tedersoo, Leho; Mikryukov, Vladimir; Zizka, Alexander; Bahram, Mohammad; Hagh‐Doust, Niloufar; Anslan, Sten; Prylutskyi, Oleh; Delgado‐Baquerizo, Manuel; Maestre, Fernando T; Pärn, Jaan; Öpik, Maarja; Moora, Mari; Zobel, Martin; Espenberg, Mikk; Mander, Ülo; Khalid, Abdul Nasir; Corrales, Adriana; Agan, Ahto; Vasco‐Palacios, Aída‐M; Saitta, Alessandro … Abarenkov, Kessy (2022). Global Change Biology, 28 (22). DOI: 10.1111/gcb.16398.
2022 | Medical science
Mapping genomic loci implicates genes and synaptic biology in schizophrenia.

Trubetskoy, Vassily; Pardinas, Antonio F; Qi, Ting; Panagiotaropoulou, Georgia; Awasthi, Swapnil; Bigdeli, Tim B; Bryois, Julien; Chen, Chia-Yen; Dennison, Charlotte A; Hall, Lynsey S; Lam, Max; Watanabe, Kyoko; Frei, Oleksandr; Ge, Tian; Harwood, Janet C; Koopmans, Frank; Magnusson, Sigurdur; Richards, Alexander L; Sidorenko, Julia; Wu, Yang … (2022). Nature, 604 (7906), 502−508. DOI: 10.1038/s41586-022-04434-5.
2022 | NLP
Open and Competitive Multilingual Neural Machine Translation in Production.

Tättar, Andre; Purason, Taido; Kuulmets, Hele-Andra; Luhtaru, Agnes; Rätsep, Liisa; Tars, Maali; Pinnis, Marcis; Bergmanis, Toms; Fishel, Mark (2022). Baltic Journal of Modern Computing, 10, pages 422−434. DOI: 10.22364/bjmc.2022.10.3.15.
2022 | Medical science
The 1^st year of the COVID-19 epidemic in Estonia: a population-based nationwide sequential/consecutive cross-sectional study.

Uusküla, Anneli; Kalda, Ruth; Solvak, Mihkel; Jürisson, Mikk; Käärik, Meelis; Fischer, Krista; Keis, Aime; Raudvere, Uku; Vilo, Jaak; Peterson, Hedi; Käärik, Ene; Metspalu, Mait; Jürgenson, Tuuli; Milani, Lili; Kolberg, Liis; Tiit, Ene M; Vassil, Kristjan (2022). Public Health, 205, 150−156. DOI: 10.1016/j.puhe.2022.02.004.

2021 | Biology
Papua New Guinean Genomes Reveal the Complex Settlement of North Sahul.

Brucato, Nicolas; André, Mathilde; Tsang, Roxanne; Saag, Lauri; Kariwiga, Jason; Sesuki, Kylie; Beni, Teppsy; Pomat, William; Muke, John; Meyer, Vincent; Boland, Anne; Deleuze, Jean- François; Sudoyo, Herawati; Mondal, Mayukh; Pagani, Luca; Gallego Romero, Irene; Metspalu, Mait; Cox, Murray P; Leavesley, Matthew; Ricaut, François-Xavier … Ávila-Arcos, Maria C (2021). Molecular Biology and Evolution, 38 (11). DOI: 10.1093/molbev/msab238.
2021 | Medical science
Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome.

2Porcu, Eleonora; Sadler, Marie C; Lepik, Kaido; Auwerx, Chiara; Wood, Andrew R; Weihs, Antoine; Ribeiro, Diogo M; Bandinelli, Stefania; Tanaka, Toshiko; Nauck, Matthias; Volker, Uwe; Delaneau, Olivier; Metspalu, Andres; Teu-Mer, Alexander; Frayling, Timothy; Santoni, Federico A; Reymond, Alexandre; Kutalik, Zoltan (2021). Nature Communications, 12 (1). DOI: 10.1038/s41467-021-25805-y.
2021 | Chemistry
Uncertainty of small enthalpy effects measured by isothermal calorimetric titration.

Darnell, Astrid; Leito, Ivo; Sikk, Lauri; Porosk, Ly (2021). Journal of Chemical Metrology, 1, 25−37. DOI: 10.25135/jcm.57.21.03.1994.
2021 | NLP
Translation Transformers Rediscover Inherent Data Domains.

Del, Maksym; Korotkova, Elizaveta; Fishel, Mark (2021). In: Proceedings of the Sixth Conference on Machine Translation. (599−613). Association for Computational Linguistics.
2021 | Biology
Phantom epistasis between unlinked loci.

Hemani, Gibran; Powell, Joseph E.; Wang, Huanwei; Shakhbazov, Konstantin; Westra, Harm-Jan; Esko, Tonu; Henders, Anjali K.; McRae, Allan F.; Martin, Nicholas G.; Metspalu, Andres; Franke, Lude; Montgomery, Grant W.; Goddard, Michael E.; Gibson, Greg; Yang, Jian; Visscher, Peter M. (2021). Nature, 596 (7871), E1−U5. DOI: 10.1038/s41586-021-03765-z.
2021 | Biology
Retraction Note: Detection and replication of epistasis influencing transcription in humans.

Hemani, Gibran; Shakhbazov, Konstantin; Westra, Harm-Jan; Esko, Tonu; Henders, Anjali K.; McRae, Allan F.; Yang, Jian; Gibson, Greg; Martin, Nicholas G.; Metspalu, Andres; Franke, Lude; Montgomery, Grant W.; Visscher, Peter M.; Powell, Joseph E. (2021). Nature, 596 (7871), 306−306. DOI: 10.1038/s41586-021-03766-y.
2021 | Chemistry
Energetics and Structures of Adducts of JohnPhos(Au+), PPh3(Au+), and IPr(Au+) with Organic Substrates: A Mass Spectrometry and DFT Study.

Iacobucci, Claudio; Massi, Lionel; Dunach, Elisabet; Burk, Peeter; Gal, Jean-Francois (2021). Organometallics, 40 (11), 1642−1653. DOI: 10.1021/acs.organomet.1c00111.
2021 | Chemistry
Hexagonal Macroparticles from Hierarchical Self-Organization of Chiral Trigonal Pd3L6 Macrotetracycles.

Jurcek, Ondrej; Nonappa; Kalenius, Elina; Jurcek, Pia; Linnanto, Juha M.; Puttreddy, Rakesh; Valkenier, Hennie; Houbenov, Nikolay; Babiak, Michal; Peterek, Miroslav; Davis, Anthony P.; Marek, Radek; Rissanen, Kari (2021). Cell Reports Physical Science, 2, 100303-1−100303-19. DOI: 10.1016/j.xcrp.2020.100303.
2021 | Biology
A compendium of uniformly processed human gene expression and splicing quantitative trait loci.

Kerimov, Nurlan; Hayhurst, James D.; Peikova, Kateryna; Manning, Jonathan R.; Walter, Peter; Kolberg, Liis; Samoviča, Marija; Sakthivel, Manoj Pandian; Kuzmin, Ivan; Trevanion, Stephen J.; Burdett, Tony; Jupp, Simon; Parkinson, Helen; Papatheodorou, Irene; Yates, Andrew D.; Zerbino, Daniel R.; Alasoo, Kaur (2021). Nature Genetics, 53, 1290−1299. DOI: 10.1038/s41588-021-00924-w.
2021 | Biology
Patterns of genetic connectedness between modern and medieval Estonian genomes reveal the origins of a major ancestry component of the Finnish population.

Kivisild, Toomas; Saag, Lehti; Hui, Ruoyun; Biagini, Simone Andrea; Pankratov, Vasili; D’Atanasio, Eugenia; Pagani, Luca; Saag, Lauri; Rootsi, Siiri; Magi, Reedik; Metspalu, Ene; Valk, Heiki; Malve, Martin; Irdt, Kadri; Reisberg, Tuuli; Solnik, Anu; Scheib, Christiana L.; Seidman, Daniel N; Williams, Amy L; Tambets, Kristiina … Metspalu, Mait (2021). The American Journal of Human Genetics, 108 (9), 1792−1806. DOI: 10.1016/j.ajhg.2021.07.012.
2021 | Earth science
Hazardous substances in the sediments and their pathways from potential sources in the eastern Gulf of Finland.

Kuprijanov, Ivan.; Väli, Germo.; Sharov, Andrey.; Berezina, Nadezhda.; Liblik, Taavi.; Lips, Urmas.; Kolesova, Natalja.; Maanio, Jaakko.; Junttila, Ville.; Lips, Inga. (2021). Marine Pollution Bulletin, 170. DOI: 10.1016/j.marpolbul.2021.112642.
2021 | Chemistry
Strengths of Acids in Acetonitrile.

Kütt, Agnes; Tshepelevitsh, Sofja; Saame, Jaan; Lõkov, Märt; Kaljurand, Ivari; Selberg, Sigrid; Leito, Ivo (2021). European Journal of Organic Chemistry, 2021 (9), 1407−1419. DOI: 10.1002/ejoc.202001649.
2021 | Medical science
Post-Aire Medullary Thymic Epithelial Cells and Hassall’s Corpuscles as Inducers of Tonic Pro-Inflammatory Microenvironment.

Laan, Martti; Salumets, Ahto; Klein, Annabel; Reintamm, Kerli; Bichele, Rudolf; Peterson, Hedi; Peterson, Pärt (2021). Frontiers in Immunology, 12 (12). DOI: 10.3389/fimmu.2021.635569.
2021 | Biology
Soomeugrilaste geneetilised juured.

Metspalu, Mait; Saag; Lehti; Tambets, Kristiina (2021). Eesti Loodus, 6, 32−36.
2021 | Biology
Evaluating the Impact of Sex-Biased Genetic Admixture in the Americas through the Analysis of Haplotype Data.

Ongaro, Linda; Molinaro, Ludovica; Flores, Rodrigo; Marnetto, Davide; Capodiferro, Marco R.; Alarcón-Riquelme, Marta E.; Moreno-Estrada, Andrés; Mabunda, Nedio; Ventura, Mario; Tambets, Kristiina; Achilli, Alessandro; Capelli, Cristian; Metspalu, Mait; Pagani, Luca; Montinaro, Francesco (2021). Genes, 12 (10). DOI: 10.3390/genes12101580.
2021 | Biology
Continental-scale genomic analysis suggests shared post-admixture adaptation in the Americas.

Ongaro, Linda; Mondal, Mayukh; Flores, Rodrigo; Marnetto, Davide; Molinaro, Ludovica; Alarcón-Riquelme, Marta E; Moreno-Estrada, Andrés; Mabunda, Nedio; Ventura, Mario; Tambets, Kristiina; Hellenthal, Garrett; Capelli, Cristian; Kivisild, Toomas; Metspalu, Mait; Pagani, Luca; Montinaro, Francesco (2021). Human Molecular Genetics, 30 (22), 2123-2134. DOI: 10.1093/hmg/ddab177.
2021 | Chemistry
Quantitative electrospray ionization efficiency scale: 10 years after.

Oss, Merit; Tshepelevitsh, Sofja; Kruve, Anneli; Liigand, Piia; Liigand, Jaanus; Rebane, Riin; Selberg, Sigrid; Ets, Kristel; Herodes, Koit; Leito, Ivo (2021). Rapid Communications in Mass Spectrometry, 35 (21), ARTN e9178. DOI: 10.1002/rcm.9178.
2021 | Biology
Genetic ancestry changes in Stone to Bronze Age transition in the East European plain.

Saag, Lehti; Vasilyev, Sergey V; Varul, Liivi; Kosorukova, Natalia V; Gerasimov, Dmitri V; Oshibkina, Svetlana V; Griffith, Samuel J; Solnik, Anu; Saag, Lauri; D’Atanasio, Eugenia; Metspalu, Ene; Reidla, Maere; Rootsi, Siiri; Kivisild, Toomas; Scheib, Christiana Lyn; Tambets, Kristiina; Kriiska, Aivar; Metspalu, Mait (2021). Science Advances, 7 (4). DOI: 10.1126/sciadv.abd6535.
2021 | Biology
Origin and diffusion of human Y chromosome haplogroup J1-M267.

Sahakyan, Hovhannes; Margaryan, Ashot; Saag, Lauri; Karmin, Monika; Flores, Rodrigo; Haber, Marc; Kushniarevich, Alena; Khachatryan, Zaruhi; Bahmanimehr, Ardeshir; Parik, Jüri; Karafet, Tatiana; Yunusbayev, Bayazit; Reisberg, Tuuli; Solnik, Anu; Metspalu, Ene; Hovhannisyan, Anahit; Khusnutdinova, Elza K.; Behar, Doron M.; Metspalu, Mait; Yepiskoposyan, Levon; Rootsi, Siiri; Villems, Richard (2021). Scientific Reports, 11, 6659. DOI: 10.1038/s41598-021-85883-2.
2021 | Biology
Ancient genomes reveal structural shifts after the arrival of Steppe-related ancestry in the Italian Peninsula.

Saupe, T.; Montinaro, F.; Scaggion, C.; Carrara, N.; Kivisild, T.; D’Atanasio, E.; Hui, R.; Solnik, A.; Lebrasseur, O.; Larson, G.; Alessandri, L.; Arienzo, I.; De Angelis, F.; Rolfo, M.F.; Skeates, R.; Silvestri, L.; Beckett, J.; Talamo, S.; Dolfini, A.; Miari, M. Scheib, C.L. (2021). Current Biology, 31 (12), 2576−2591.e12. DOI: 10.1016/j.cub.2021.04.022.
2021 | Biology
Dissecting the paternal founders of Mundari (Austroasiatic) speakers associated with the language dispersal in South Asia.

Singh, Prajjval Pratap; Vishwakarma, Shani; Sultana, Gazi Nurun Nahar; Pilvar, Arno; Karmin, Monika; Rootsi, Siiri; Villems, Richard; Metspalu, Mait; Behar, Doron M.; Kivisild, Toomas; van Driem, George; Chaubey, Gyaneshwer (2021). European Journal of Human Genetics, 29, 528−532. DOI: 10.1038/s41431-020-00745-1.
2021 | Chemistry
Experimental and Computational Study of Aminoacridines as MALDI(−)-MS Matrix Materials for the Analysis of Complex Samples.

Tammekivi, Eliise; Ghiami-Shomami, Ali; Tshepelevitsh, Sofja; Trummal, Aleksander; Ilisson, Mihkel; Selberg, Sigrid; Vahur, Signe; Teearu, Anu; Lõkov, Märt; Peets, Pilleriin; Pagano, Todd; Leito, Ivo (2021). Journal of the American Society for Mass Spectrometry, 32 (4), 1080−1095. DOI: 10.1021/jasms.1c00037.
2021 | Biology
The Ami and Yami aborigines of Taiwan and their genetic relationship to East Asian and Pacific populations.

Tatte, Kai; Metspalu, Ene; Post, Helen; Palencia-Madrid, Leire; Luis, Javier Rodriguez; Reidla, Maere; Rea, Anneliis; Tamm, Erika; Moding, Everett J.; de Pancorbo, Marian M.; Garcia- Bertrand, Ralph; Metspalu, Mait; Herrera, Rene J. (2021). European Journal Of Human Genetics, 29 (7), 1092−1102. DOI: 10.1038/s41431-021-00837-6.
2021 | Chemistry
Hydrostatic High-Pressure-Induced Denaturation of LH2 Membrane Proteins.

Timpmann, Kou; Linnanto, Juha Matti; Yadav, Dheerendra; Kangur, Liina; Freiberg, Arvi (2021). The Journal of Physical Chemistry B, 125 (35), 9979−9989. DOI: 10.1021/acs.jpcb.1c05789.
2021 | Medical science
The 1st year of the COVID-19 epidemic in Estonia: an interrupted time series of population based nationwide cross-sectional studies.

Uusküla, Anneli; Kalda, Ruth; Solvak, Mihkel; Jürisson, Mikk; Käärik, Meelis; Fischer, Krista; Keis, Aime; Raudvere, Uku; Vilo, Jaak; Peterson, Hedi; Käärik, Ene; Metspalu, Mait; Jürgenson, Tuuli; Milani, Lili; Kolberg, Liis; Tiit, Ene-Margit; Vassil, Kristjan (2021). medRxiv, 1−22. DOI: 10.1101/2021.09.06.21263154.
2021 | Biology
Ancestral patterns of recessive dystrophic epidermolysis bullosa mutations in Hispanic populations suggest sephardic ancestry.

Warshauer, Emily Mira; Brown, Adam; Fuentes, Ignacia; Shortt, Jonathan; Gignoux, Chris; Montinaro, Francesco; Metspalu, Mait; Youssefian, Leila; Vahidnezhad, Hassan; Jackow, Joanna; Christiano, Angela M.; Uitto, Jouni; Fajardo-Ramirez, Oscar R.; Salas-Alanis, Julio C.; McGrath, John A.; Consuegra, Liliana; Rivera, Carolina; Maier, Paul A.; Runfeldt, Goran; Behar, Doron M. … Roop, Dennis R. (2021). American Journal of Medical Genetics Part A, 185 (11), 3390−3400. DOI: 10.1002/ajmg.a.62456.
2021 | Biology
Ancestral contributions to contemporary European complex traits.

Marnetto, Davide; Pankratov, Vasili; Mondal, Mayukh; Montinaro, Francesco; Pärna, Katri; Vallini, Leonardo; Molinaro, Ludovica; Saag, Lehti; Loog, Liisa; Montagnese, Sara; Costa, Rodolfo; Metspalu, Mait; Eriksson, Anders; Pagani, Luca. (2021). DOI: 10.1101/2021.08.03.454888.
2021 | Earth science
Seasonality Of Submesoscale Coherent Vortices In The Northern Baltic Proper: A Model Study.

Väli, Germo.; Zhurbas, Victor. (2021). Фундаментальная и прикладная гидрофизика, 3, 122−129. DOI: 10.7868/S2073667321030114.
2021 | NLP
Direct Exploitation of Attention Weights for Translation Quality Estimation.

Yankovskaya, Lisa; Fishel, Mark (2021). Association for Computational Linguistics, 955−960.

2020 | Chemistry
Computational Studies of Acidities of Some Hydrodxycoumarins.

Ghiami-Shomami, Ali; Ashtari-Delivand, Mona; Ghalami-Choobar, Bahram; Leito, Ivo (2020). Computational & Theoretical Chemistry, 1190. DOI: 10.1016/j.comptc.2020.113008
2020 | Medical science
Mapping of ACE2 binding site on SARS-CoV-2 spike protein S1: docking study with peptides.

Kuznetsov, Aleksei; Järv, Jaak (2020). Proceedings of the Estonian Academy of Sciences, 69 (3).
2020 | Chemistry
Predicting adsorption selectivities from pure gas isotherms for gas mixtures in metal-organic frameworks.

Kundu, Arpan; Sillar, Kaido; Sauer, Joachim (2020). Chemical Science, 11, 643-655. DOI: 10.1039/C9SC03008E
2020 | Biology
Global patterns and determinants of bacterial communities associated with ectomycorrhizal root tips of Alnus species.

Aslani, Farzad; Tedersoo, Leho; Põlme, Sergei; Knox, Oliver; Bahram, Mohammad (2020). Soil Biology and Biochemistry, 148, 107923. DOI: 10.1016/j.soilbio.2020.107923
2020 | Chemistry
DFT study of 2,9-bis(1,2,4-triazin-3-yl)-1,10-phenanthroline (BTPhen) and its derivatives complexation with lanthanide series.

Burk, Jaanus; Adamson, Aiko; Sikk, Lauri; Tämm, Kaido; Pupart, Anni; Burk, Peeter (2020). Computational and Theoretical Chemistry, 1175, 112729. DOI: 10.1016/j.comptc.2020.112729.
2020 | Biology
Correction to: Archaic mitochondrial DNA inserts in modern day nuclear genomes.

Bücking, Robert; Cox, Murray P; Hudjashov, Georgi; Saag, Lauri; Sudoyo, Herawati; Stoneking, Mark (2020). BMC Genomics, 21, (55). DOI: 10.1186/s12864-020-6449-8.
2020 | Biology
Ancestry deconvolution and partial polygenic score can improve susceptibility predictions in recently admixed individuals.

Marnetto, Davide; Pärna, Katri; Läll, Kristi; Molinaro, Ludovica; Montinaro, Francesco; Haller, Toomas; Metspalu, Mait; Mägi, Reedik; Fischer, Krista; Pagani, Luca (2020). Nature Communications volume 11, 1628. DOI: 10.1038/s41467-020-15464-w.
2020 | Chemistry
Understanding the Behavior of Fully Non-Toxic Polypyrrole-Gelatin and Polypyrrole-PVdF Soft Actuators with Choline Ionic Liquids.

Elhi, Fred; Karu, Karl; Rinne, Pille; Nadel, Kadi-Anne; Jarvekulg, Martin; Aabloo, Alvo; Tamm, Tarmo; Ivanistsev, Vladislav; Pohako-Esko, Kaija (2020). Actuators, 9 (2). DOI: 10.3390/act9020040.
2020 | Chemistry
Graphene–Ionic Liquid Interfacial Potential Drop from Density Functional Theory-Based Molecular Dynamics Simulations.

Ers, Heigo; Lembinen, Meeri; Mišin, Maksim; Seitsonen, Ari P.; Fedorov, Maxim V.; Ivaništšev, Vladislav B. (2020). Journal of Physical Chemistry C, 124 (36), 19548−19555. DOI: 10.1021/acs.jpcc.0c02964.
2020 | NLP
BERGAMOT-LATTE Submissions for the WMT20 Quality Estimation Shared Task.

Fomicheva, Marina; Sun, Shuo; Yankovskaya, Lisa; Blain, Frederic; Chaudhary, Vishrav; Fishel, Mark; Guzman, Francisco; Specia, Lucia (2020). Association for Computational Linguistics, 1008−1015.
2020 | NLP
Unsupervised Quality Estimation for Neural Machine Translation.

Fomicheva, Marina; Sun, Shuo; Yankovskaya, Lisa; Blain, Frédéric; Guzmán, Francisco; Fishel, Mark; Aletras, Nikolaos; Chaudhary, Vishrav; Specia, Lucia (2020). Transactions of the Association for Computational Linguistics, 8, 539−555. DOI: 10.1162/tacl_a_00330.
2020 | Medical science
Identification of fetal unmodified and 5-hydroxymethylated CG sites in maternal cell-free DNA for non-invasive prenatal testing.

Gordevičius, Juozas; Narmontė, Milda; Gibas, Povilas; Kvederavičiūtė, Kotryna; Tomkutė, Vita; Paluoja, Priit; Krjutškov, Kaarel; Salumets, Andres; Kriukienė, Edita (2020). Clinical Epigenetics, 12 (1). DOI: 10.1186/s13148-020-00938-x.
2020 | Computer science
Cycle-Consistent Adversarial Neural Networks Based Low Quality Fingerprint Enhancement.

Karabulut, Dogus; Tertychnyi, Pavlo; Arslan, Hasan S; Ozcinar, Cagri; Nasrollahi, Kamal; Valls, Joan; Vilaseca, Joan; Moeslund, Thomas B; Anbarjafari, Gholamreza (2020). Multimedia Tools and Applications, 79, 1. DOI: 10.1007/s11042-020-08750-8.
2020 | NLP
Evaluating Multilingual BERT for Estonian.

Kittask, Claudia; Milintsevich, Kirill; Sirts, Kairit (2020). Baltic HLT (pp. 19-26). DOI: 10.48550/arXiv.2010.00454.
2020 | Biology
Co-expression analysis reveals interpretable gene modules controlled by trans-acting genetic variants.

Kolberg, Liis; Kerimov, Nurlan; Peterson, Hedi; Alasoo, Kaur (2020). eLife, 9, e58705. DOI: 10.7554/eLife.58705.
2020 | Physics
Establishment of the Qy Absorption Spectrum of Chlorophyll a Extending to Near-Infrared.

Leiger, Kristjan; Linnanto, Juha Matti; Freiberg, Arvi (2020). Molecules, 25 (17), 3796. DOI: 10.3390/molecules25173796.
2020 | Chemistry
Calculation of core‐level electron spectra of ionic liquids.

Lembinen, Meeri; Nõmmiste, Ergo; Ers, Heigo; Docampo‐Álvarez, Borja; Kruusma, Jaanus; Lust, Enn; Ivaništšev, Vladislav B (2020). International Journal of Quantum Chemistry. e26247. DOI: 10.1002/qua.26247.
2020 | Medical science
A genomic and historical synthesis of plague in 18th century Eurasia.

Guellil, Meriam; Kersten, Oliver; Namouchi, Amine; Luciani, Stefania; Marota, Isolina; Arcini, Caroline A; Iregren, Elisabeth; Lindemann, Robert A; Warfvinge, Gunnar; Bakanidze, Lela; Bitadze, Lia; Rubini, Mauro; Zaio, Paola; Zaio, Monica; Neri, Damiano; Stenseth, N. C; Bramanti, Barbara (2020). PNAS, 117 (45), 28328-28335. DOI: 10.1073/pnas.2009677117
2020 | Biology
Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago.

Natri, Heini M; Bobowik, Katalina S; Kusuma, Pradiptajati; Darusallam, Crenna C; Jacobs, Guy S; Hudjashov, Georgi; Lansing, Stephen J; Sudoyo, Herawati; Banovich, Nicholas E; Cox, Murray P; Romero, Gallego I (2020). PLoS Genetics, 16(5):e1008749. DOI: 10.1371/journal.pgen.1008749.
2020 | Medical science
Genetic and in vitro inhibition of PCSK9 and calcific aortic valve stenosis.

Perrot, Nicholas; Valerio, Valerio; Moschetta, Donato; Boekholdt, Matthijs S; Dina, Christian; Chen, Hao Y; Abner, Erik; Martinsson, Andreas; Manikpurage, Hasanga D; Rigade, Sidwell; Capoulade, Romain; Mass, Elvira; Clavel, Marie-Annick; Le Tourneau, Thierry; Messika-Zeitoun, David; Wareham, Nicholas J; Engert, James C; Polvani, Gustav; Pibarot, Philippe; Esko, Tõnu; … Arsenault, Benoit J (2020). JACC: Basic to Translational Science. 5 (7). DOI: 10.1016/j.jacbts.2020.05.004.
2020 | Biology
Multidisciplinary investigation of two Egyptian child mummies curated at the University of Tartu Art Museum, Estonia (Late/Graeco-Roman Periods).

Oras, Ester; Anderson, Jaanika; Tõrv, Mari; Vahur, Signe; Rammo, Riina; Remmer, Sunne; Mölder, Maarja; Malve, Martin; Saag, Lehti; Saage, Ragnar; Teearu-Ojakäär, Anu; Peets, Pilleriin; Tambets, Kristiina; Metspalu, Mait; Lees, David C; Barclay, Maxwell V L; Hall, Martin J R; Ikram, Salima; Piombino-Mascali, Dario (2020) PLoS One, 15(1): e0227446. DOI: 10.1371/journal.pone.0227446.
2020 | Biology
Differences in local population history at the finest level: the case of the Estonian population.

Pankratov, Vasili; Montinaro, Francesco; Kushniarevich, Alena; Hudjashov, Georgi; Jay, Flora; Saag, Lauri, Flores, Rodrigo; Marnetto, Davide; Seppel, Marten; Kals, Mart; Võsa, Urmo; Taccioli, Cristian; Möls, Märt; Milani, Lili; Aasa, Anto; Lawson, Daniel J; Esko, Tõnu; Mägi, Reedik; Pagani, Luca; Metspalu, Andres; Metspalu, Mait (2020). European journal of human genetics, 28 (11). DOI: 10.1038/s41431-020-0699-4.
2020 | Biology
Evaluating genotype imputation pipeline for ultra low coverage ancient genomes.

Hui, Ruoyun; D’Atanasio, Eugenia; Cassidy, Lara M; Scheib, Christiana L; Kivisild, Toomas (2020). Scientific Reports 10, 18542. DOI: 10.1038/s41598-020-75387-w.
2020 | Chemistry
LogP determination for highly lipophilic hydrogen-bonding anion receptor molecules

Tshepelevitsh, Sofja; Kadam, Sandip A; Darnell, Astrid; Bobacka, Johan; Rüütel, Alo; Haljasorg, Tõiv; Leito, Ivo (2020). Analytica Chimica Acta, 1132. DOI: 10.1016/j.aca.2020.07.024
2020 | Medical science
Fetal HLA-G mediated immune tolerance and interferon response in preeclampsia.

Wedenoja, Satu; Yoshihara, Masahito; Teder, Hindrek; Sariola, Hannu; Gissler, Mika; Katayama, Shintaro; Wedenoja, Juho; Häkkinen, Inka M; Ezer, Sini; Linder, Nina; Lundin, Johan; Skoog, Tiina; Sahlin, Ellika; Iwarsson, Erik; Pettersson, Karin; Kajantie, Eero; Mokkonen, Mikael; Heinonen, Seppo; Laivuori, Hannele; Krjutškov, Kaarel … Kere, Juha (2020). EBioMedicine, 59, 102872−102872. DOI: 10.1016/j.ebiom.2020.102872.
2020 | Biology
A human-specific VNTR in the TRIB3 promoter causes gene expression variation between individuals.

Örd, Tiit; Puurand, Tarmo; Örd, Daima; Annilo, Tarmo; Möls, Märt; Remm, Maido; Örd, Tõnis (2020). PLoS Genetics, 16(8):e1008981. DOI: 10.1371/journal.pgen.1008981.
2020 | Computer science
Failure analysis of the interval-passing algorithm for compressed sensing.

Yakimenka, Yauhen; Rosnes, Eirik (2020). IEEE Transactions on Information Theory, 66 (4). DOI: 10.1109/TIT.2020.2969163

2019 | Earth science
Hindcast of the mesoscale eddy field in the Southeastern Baltic Sea: Model output vs satellite imagery.

Zhurbas, V; Väli, G; Kostianoy, A; Lavrova, O (2019). Russian Journal of Earth Sciences, 19 (4):1-17. DOI: 10.2205/2019ES000672.
2019 | Earth science
Rotation of floating particles in submesoscale cyclonic and anticyclonic eddies: a model study for the southeastern Baltic Sea.

Zhurbas, V; Väli, G; Kuzmina, N (2019). Ocean Science, 15 (6):1691-1705. DOI: 10.5194/os-15-1691-2019.
2019 | Biology
Ancestry-specific analyses reveal differential demographic histories and opposite selective pressures in modern South Asian populations.

Yelmen, B; Mondal, M; Marnetto, D, Pathak, A; Montinaro, F; Romero, I G; Kivisild, T; Metspalu, M; Pagani, L (2019). Molecular biology and evolution 36 (8):1628-1642. DOI: 10.1093/molbev/msz037.
2019 | Earth science
Satellite-assisted monitoring of water quality to support the implementation of the Water Framework Directive.

Papathanasopoulou, Eleni; Simis, Stefan; Alikas, Krista; Ansper, Ave; Anttila, Saku; Attila, Jenni et al (2019). Zenodo. DOI: 10.5281/zenodo.3903776.
2019 | Biology
Multiple Deeply Divergent Denisovan Ancestries in Papuans.

Jacobs GS, Hudjashov G, Saag L, Kusuma P, Darusallam CC, Lawson DJ, Mondal M, Pagani L, Ricaut FX, Stoneking M, Metspalu M, Sudoyo H, Lansing JS, Cox MP (2019). Cell, 177 (4). DOI: 10.1016/j.cell.2019.02.035.
2019 | Biology
Archaic mitochondrial DNA inserts in modern day nuclear genomes.

Bücking R, Cox MP, Hudjashov G, Saag L, Sudoyo H, Stoneking M (2019). BMC Genomics, 20 (1). DOI: 10.1186/s12864-019-6392-8.
2019 | Chemistry
Predicting Melting Points of Biofriendly Choline-Based Ionic Liquids with Molecular Dynamics.

Karu, Karl; Elhi, Fred; Põhako-Esko, Kaija; Ivaništšev, Vladislav (2019). Applied Sciences, 9 (24). DOI: 10.3390/app9245367.
2019 | Biology
AluMine: alignment-free method for the discovery of polymorphic Alu element insertions.

Puurand T, Kukuškina V, Pajuste FD, Remm M (2019). Mobile DNA, 10:31. DOI: 10.1186/s13100-019-0174-3.
2019 | Biology
Genome-wide analysis of Corsican population reveals a close affinity with Northern and Central Italy.

Tamm, E, Di Cristofaro, J, Mazières, S et al (2019). Sci Rep, 9 (1). DOI: 10.1038/s41598-019-49901-8.
2019 | Archaeology
Evaluating macroscopic sex estimation methods using genetically sexed archaeological material: The medieval skeletal collection from St John’s Divinity School, Cambridge.

Inskip, S, Scheib, CL, Wohns, AW, Ge, X, Kivisild, T, & Robb, (2019). American Journal of Physical Anthropology, 168 (2). DOI: 10.1002/ajpa.23753.
2019 | Biology
Shifts in the Genetic Landscape of the Western Eurasian Steppe Associated with the Beginning and End of the Scythian Dominance.

Järve M, Saag L, Scheib CL, Pathak AK, Montinaro F, Pagani L, Flores R, Guellil M, Saag L, Tambets K, et al (2019). Current Biology: 29 (14). DOI: 10.1016/j.cub.2019.06.019.
2019 | Biology
The Arrival of Siberian Ancestry Connecting the Eastern Baltic to Uralic Speakers further East.

Saag L, Laneman M, Varul L, Malve M, Valk H, Razzak MA, Shirobokov IG, Khartanovich VI, et al (2019). Curr Biol, 29 (10). DOI: 10.1016/j.cub.2019.04.026.
2019 | Biology
The Arrival of Siberian Ancestry Connecting the Eastern Baltic to Uralic Speakers further East.

Thomas MG, Kriiska A, Kivisild T, Villems R, Lang V, Metspalu M, Tambets K (2019). Current Biology, 29 (10). DOI: 10.1016/j.cub.2019.04.026.
2019 | Archaeology
East Anglian early Neolithic monument burial linked to contemporary Megaliths.

Scheib, CL, Hui, R, D’Atanasio, E, Wohns, AW, Inskip, SA, Rose, A, Cessford, C, O’Connell, TC, Robb, JE, Evans, C, Patten, R; Kivisild, T (2019). Annals of Human Biology, 46 (2). DOI: 10.1080/03014460.2019.1623912.
2019 | Physics
Absorption-emission symmetry breaking and the different origins of vibrational structures of the 1Qy and 1Qx electronic transitions of pheophytin aJ.

Rätsep M, Linnanto JM, Muru R, Biczysko M, Reimers JR, Freiberg A (2019). Chem. Phys. 151 (16). DOI: 10.1063/1.5116265.
2019 | Biology
The genomic impact of European colonization of the Americas.

Ongaro L, Scliar MO, Flores R, Raveane A, Marnetto D, Sarno S, Gnecchi-Ruscone GA, Alarcón-Riquelme ME, et al (2019). Current Biology, 29(23):3974-3986.e4. DOI: 10.1016/j.cub.2019.09.076.
2019 | Biology
Y-chromosomal connection between Hungarians and geographically distant populations of the Ural Mountain region and West Siberia.

Post H, Nemeth E, Klima L, Flores R, Feher T, Türk A, Székely G, Sahakyan H, Mondal M, Montinaro F, Karmin M, Saag L, Yunusbayev B, Khusnutdinova EK, Metspalu E, Villems R, Tambets K, Rootsi S (2019). Scientific Reports, 9 (1):7786. DOI: 10.1038/s41598-019-44272-6.
2019 | Biology
Y-chromosomal analysis of clan structure of Kalmyks, the only European Mongol people, and their relationship to Oirat-Mongols of Inner Asia.

Balinova N, Post H, Kushniarevich A, Flores R, Karmin M, Sahakyan H, Reidla M, Metspalu E, Litvinov S, Dzhaubermezov M, Akhmetova V, Khusainova R, et al (2019). European Journal of Human Genetics, 27 (9):1466-1474. DOI: 10.1038/s41431-019-0399-0.
2019 | Biology
g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update).

Raudvere, Uku; Kolberg, Liis; Kuzmin, Ivan; Arak, Tambet; Adler, Priit; Peterson, Hedi; Vilo, Jaak (2019). Nucleic acids research, 47 (W1):W191-W198. DOI: 10.1093/nar/gkz369.
2019 | Biology
West Asian sources of the Eurasian component in Ethiopians: a reassessment.

Molinaro, L, Montinaro, F, Yelmen, B, Marnetto, D, Behar, DM, Kivisild, T, Pagani, L (2019). Scientific Reports, 9 (1):18811. DOI: 10.1038/s41598-019-55344-y.
2019 | Biology
A Transient Pulse of Genetic Admixture from the Crusaders in the Near East Identified from Ancient Genome Sequences.

Haber M, Doumet-Serhal C, Scheib CL, Xue Y, Mikulski R, Martiniano R, Fischer-Genz B, Schutkowski H, Kivisild T, Tyler-Smith C. (2019). American Journal of Human Genetics, 104 (5):977-984. DOI: 10.1016/j.ajhg.2019.03.015.
2019 | Biology
The genetic legacy of continental scale admixture in Indian Austroasiatic speakers.

Tätte K, Pagani L, Pathak AK, Kõks S, Ho Duy B, Ho XD, Sultana GNN, Sharif MI, Asaduzzaman M, Behar DM, Hadid Y, Villems R, Chaubey G, Kivisild T, Metspalu M. (2019). Scientific Reports, 9 (1):3818. DOI: 10.1038/s41598-019-40399-8.
2019 | Biology
Y Chromosome Sequences Reveal a Short Beringian Standstill, Rapid Expansion, and early Population structure of Native American Founders.

Pinotti T, Bergström A, Geppert M, Bawn M, Ohasi D, Shi W, Lacerda DR, Solli A, Norstedt J, Reed K, et al (2019). Current Biology, 29 (1):149-157.e3. DOI: 10.1016/j.cub.2018.11.029.
2019 | Biology
Reconstructing recent population history while mapping rare variants using haplotypes.

Yunusbaev U, Valeev A, Yunusbaeva M, Kwon HW, Mägi R, Metspalu M, Yunusbayev B (2019). Sci Rep. 9 (1):5849. DOI: 10.1038/s41598-019-42385-6.
2019 | Physics
Valence electronic structure of [EMIM][B(CN)4]: ion-pair vs. bulk description.

Kuusik I, Berholts M, Kruusma J, Tõnisoo A, Lust E, Nõmmiste E, Kisand V (2019). RSC Advances, 9 (57):33140-33146. DOI: 10.1039/c9ra06762k.
2019 | Computer science
Multimodal Sequential Fashion Attribute Prediction.

Hasan Sait Arslan, Kairit Sirts, Mark Fishel, Gholamreza Anbarjafari (2019). Information, 10 (10):308. DOI: 10.3390/info10100308.
2019 | Medical science
Computational framework for targeted high coverage sequencing based NIPT.

Teder, Hindrek; Paluoja, Priit; Rekker, Kadri; Salumets, Andres; Krjutskov, Kaarel; Palta, Priit (2019). PLoS ONE, 14 (7):e0209139. DOI: 10.1371/journal.pone.0209139.
2019 | Medical science
Creating basis for introducing non-invasive prenatal testing in the Estonian public health setting.

Žilina, Olga; Rekker, Kadri; Kaplinski, Lauris; Sauk, Martin; Paluoja, Priit; Teder, Hindrek; Ustav, Eva-Liina; Tõnisson, Neeme; Reimand, Tiia; Ridnoi, Konstantin; Palta, Priit; Vermeesch, Joris Robert; Krjutškov, Kaarel; Kurg, Ants; Salumets, Andres (2019). Prenatal Diagnosis, 39 (13):1262−1268. DOI: 10.1002/pd.5578.
2019 | Medical science
A molecular tool for menstrual cycle phase dating of endometrial samples in endometriosis transcriptome studies.

Saare, Merli; Laisk, Triin; Teder, Hindrek; Paluoja, Priit; Palta, Priit; Koel, Mariann; Kirss, Fred; Karro, Helle; Sõritsa, Deniss; Salumets, Andres; Krjutškov, Kaarel; Peters, Maire (2019). Biology of Reproduction, 101 (4):868−868. DOI: 10.1093/biolre/ioz092.
2019 | Biology
Genetic effects on promoter usage are highly context-specific and contribute to complex traits.

Alasoo, Kaur; Rodrigues, Julia; Danesh, John; Freitag, Daniel F; Paul, Dirk S; Gaffney Daniel J (2019). Elife, 8:e41673. DOI: 10.7554/eLife.41673.
2019 | NLP
Grammatical Error Correction and Style Transfer via Zero-shot Monolingual Translation.

Korotkova, Elizaveta; Luhtaru, Agnes; Del, Maksym; Liin, Krista; Deksne, Daiga; Fishel, Mark (2019). DOI: arXiv:1903.11283.
2019 | NLP
University of Tartu’s Multilingual Multi-domain WMT19 News Translation Shared Task Submission.

Tättar, Andre; Korotkova, Elizaveta; Fishel, Mark (2019). In: Proceedings of the Fourth Conference on Machine Translation (Volume 2), pages 382−385. Association for Computational Linguistics. DOI: 10.18653/v1/W19-5342.
2019 | Computer science
Learning Accurate LSTM Models of Business Processes.

Camargo, Manuel; Dumas, Marlon; González-Rojas Oscar (2019). In: BPM 2019. Lecture Notes in Computer Science, vol 11675. Springer, Cham. DOI: 10.1007/978-3-030-26619-6_19.
2019 | Biology
Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens.

Loit K, Adamson K, Bahram M, Puusepp R, Anslan S, Kiiker R, Drenkhan R, Tedersoo L (2019). Applied and Environmental Microbiology, 85 (21):e01368-19. DOI: 10.1128/AEM.01368-19.
2019 | Chemistry
On the Basicity of Organic Bases in Different Media.

Tshepelevitsh, Sofja; Kütt, Agnes; Lõkov, Märt; Kaljurand, Ivari; Saame, Jaan; Heering, Agnes; Plieger, Paul G; Vianello, Robert; Leito, Ivo (2019). European Journal of Organic Chemistry, 2019 (40). DOI: 10.1002/ejoc.201900956
2019 | Computer science
Stopping Redundancy Hierarchy Beyond the Minimum Distance.

Yakimenka, Yauhen; Skachek, Vitaly; Bocharova, Irina E; Kudryashov, Boris D (2019). IEEE Transactions on Information Theory, 3724−3737. DOI: 10.1109/TIT.2018.2873140.
2019 | Biology
Plant diversity in Oceanic archipelagos: realistic patterns emulated by an agent‐based computer simulation.

Jõks, Madli; Pärtel, Meelis (2019). Ecography, 42 (4). DOI: 10.1111/ecog.03985.
2019 | Medical science
Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.

Tasa T, Krebs K, Kals M, Mägi R, Lauschke VM, Haller T, Puurand T, Remm M, Esko T, Metspalu A, Vilo J, Milani L (2019). European Journal of Human Genetics, 27 (3):442−454. DOI: 10.1038/s41431-018-0300-6.
2019 | Chemistry
Validation and extension of the gas‐phase superacidity scale.

Leesment, Andre; Kaljurand, Ivari; Trummal, Aleksander; Kütt, Agnes; Netscher, Thomas; Bonrath, Werner; Leito, Ivo (2019). Rapid Commun Mass Spectrom, e8598. DOI: 10.1002/rcm.8598.
2019 | Chemistry
Solute-solvent electronic interaction is responsible for initial charge separation in ruthenium complexes [Ru(bpy)3]2+ and [Ru(phen)3]2+.

Stark, CW, Trummal, A, Uudsemaa, M et al (2019). Commun Chem 2, 108 (2019). DOI: 10.1038/s42004-019-0213-5.
2019 | Chemistry
New oxacalix[4]arene carboxylate detects viologen in protic media.

Peterson, Anna; Ludvig, Mari-Liis; Martõnova, Jevgenija; Kaabel, Sandra; Kerner, Paul; Uudsemaa, Merle; Trummal, Aleksander; Fomitšenko, Maria; Pehk, Tõnis; Aav, Riina; Adamson, Jasper (2019). Supramolecular Chemistry, 32 (5): 313-319. DOI: 10.1080/10610278.2019.1659269
2019 | Computer science
Beyond temperature scaling: Obtaining well-calibrated multiclass probabilities with Dirichlet calibration.

Kull, Meelis; Perello-Nieto, Miquel; Kängsepp, Markus; Filho, Telmo S; Song, Hao; Flach Peter (2019). NeurIPS 2019. DOI: 10.48550/arXiv.1910.12656.
2019 | Computer science
Simplifying the Classification of App Reviews Using Only Lexical Features.

Shah, FA; Sirts, K; Pfahl, D (2019). In: ICSOFT 2018. Communications in Computer and Information Science, vol 1077. Springer, Cham. https://doi.org/10.1007/978-3-030-29157-0_8.
2019 | Biology
Analytical strategies to include the X‐chromosome in variance heterogeneity analyses: Evidence for trait‐specific polygenic variance structure.

Deng, Wei Q; Mao, Shihong; Kalnapenkis, Anette; Esko, Tõnu; Mägi, Reedik; Pare, Guillaume; Sun, Lei (2019). Genetic Epidemiology, 43 (7). DOI: 10.1002/gepi.22247.
2019 | NLP
Quality Estimation and Translation Metrics via Pre-trained Word and Sentence Embeddings.

Yankovskaya, Elizaveta; Tättar, Andre; Fishel, Mark (2019). In Proceedings of the Fourth Conference on Machine Translation (Volume 3), pages 101–105. Association for Computational Linguistics. DOI: 10.18653/v1/W19-5410.

2018 | Biology
The genetic ancestry of modern Indus Valley populations from Northwest India.

Pathak, Ajai K; Kadian, Anurag; Kushniarevich, Alena; Montinaro, Francesco; Mondal, Mayukh; Ongaro, Linda; Singh, Manvendra et al (2018). The American Journal of Human Genetics, 103 (6):918-929. DOI: 10.1016/j.ajhg.2018.10.022.
2018 | Biology
Ancient human parallel lineages within North America contributed to a coastal expansion.

Scheib CL, Li H, Desai T, Link V, Kendall C, Dewar G, Griffith PW et al (2018). Science, 360 (6392):1024–1027. DOI: 10.1126/science.aar6851.
2018 | Biology
Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations.

Tambets K, Yunusbayev B, Hudjashov G, Ilumäe AM, Rootsi S, Honkola T, Vesakoski O, Atkinson Q, et al (2018). Genome Biol 19 (1):139. DOI: 10.1186/s13059-018-1522-1
2018 | Biology
Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding.

Anslan S, Nilsson RH, Wurzbacher C, Baldrian P, Tedersoo L, Bahram M (2018). MycoKeys, 39:29-40. DOI: 10.3897/mycokeys.39.28109.
2018 | Chemistry
Prediction of partition and distribution coefficients in various solvent pairs with COSMO-RS.

Tshepelevitsh, Sofja; Hernits, Kertu; Leito, Ivo (2018). J Comput Aided Mol Des, 32 (6):711-722. DOI: 10.1007/s10822-018-0125-y.
2018 | NLP
Quality Estimation with Force-Decoded Attention and Cross-lingual Embeddings.

Yankovskaya, Elizaveta; Tättar, Andre, Fishel, Mark (2018). In: Proceedings of the Third Conference on Machine Translation: Shared Task Papers, pages 816–821. Association for Computational Linguistics.
2018 | NLP
Low-Resource Translation Quality Estimation for Estonian.

Yankovskaya, Elizaveta; Fishel, Mark (2018). In: Proceedings of the Eighth International Conference Baltic HLT 2018, pages 175-182. DOI: 10.3233/978-1-61499-912-6-175.
2018 | NLP
Phrase-based Unsupervised Machine Translation with Compositional Phrase Embeddings.

Del, Maksym; Tättar, Andre; Fishel, Mark (2018). In: Proceedings of the Third Conference on Machine Translation (WMT), Volume 2: Shared Task Papers. DOI: 10.18653/v1/W18-64034.
2018 | Chemistry
Performance of SCAN density functional for a set of ionic liquid ion pairs.

Karu, Karl; Mišin, Maksim; Ers, Heigo; Sun, Jianwei; Ivaništšev, Vladislav (2018). International Journal of Quantum Chemistry, 118 (13):e25582. DOI: 10.1002/qua.25582.
2018 | Chemistry
NaRIBaS - A Scripting Framework for Computational Modeling of Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab.

Roos Nerut, Eva; Karu, Karl; Voroshylova, Iuliia; Kirchner, Kathleen; Kirchner, Tom; Fedorov, Maxim; Ivaništšev, Vladislav (2018). Computation, 6, 57. DOI: 10.3390/computation6040057.
2018 | Medical science
TAC-seq: targeted DNA and RNA sequencing for precise biomarker molecule counting.

Teder, Hindrek; Koel, Mariann; Paluoja, Priit; Jatsenko, Tatjana; Rekker, Kadri; Laisk-Podar, Triin; Kukuškina, Viktorija; Velthut-Meikas, Agne; Fjodorova, Olga; Peters, Maire; Kere, Juha; Salumets, Andres; Palta, Priit; Krjutškov, Kaarel (2018). NPJ Genomic Medicine, 3:34. DOI: 10.1038/s41525-018-0072-5.
2018 | Medical science
Whole exome sequencing of benign pulmonary metastasizing leiomyoma reveals mutation in the BMP8B gene.

Sõritsa, D; Teder, H; Roosipuu, R; Tamm, H; Laisk-Podar, T; Soplepmann, P; Altraja, A; Salumets, A; Peters, M (2018). BMC Medical Genetics, 19 (1):20. DOI: 10.1186/s12881-018-0537-5.
2018 | Biology
funcExplorer: a tool for fast data-driven functional characterisation of high-throughput expression data.

Kolberg, Liis; Kuzmin, Ivan; Adler, Priit; Vilo, Jaak; Peterson, Hedi (2018). BMC Genomics, 19 (1):817. DOI: 10.1186/s12864-018-5176-x.
2018 | Medical science
Large-scale meta-analysis highlights the hypothalamic-pituitary-gonadal axis in the genetic regulation of menstrual cycle length.

Laisk T, Kukuškina V, Palmer D, Laber S, Chen CY, Ferreira T, Rahmioglu N, Zondervan K, Becker C, Smoller JW, Lippincott M, Salumets A, Granne I, Seminara S, Neale B, Mägi R, Lindgren CM (2018). Human Molecular Genetics, 27 (24):4323–4332. DOI: 10.1093/hmg/ddy317.
2018 | NLP
Neural Morphological Tagging for Estonian.

Tkachenko, Alexander; Sirts, Kairit (2018). In: Proceedings of the Eighth International Conference Baltic HLT 2018, pages 166-174. DOI: 10.48550/arXiv.1810.06908.
2018 | NLP
Modeling Composite Labels for Neural Morphological Tagging.

Tkachenko, Alexander; Sirts, Kairit (2018). In: Proceedings of the 22nd Conference on Computational Natural Language Learning, pages 368-379. DOI: 10.48550/arXiv.1810.08815.
2018 | Computer science
Simple App Review Classification with Only Lexical Features.

Shah, FA; Sirts, K; Pfahl, D. (2018). In: Proceedings of the 13th International Conference on Software Technologies, 2018, pages 112-119.
2018 | Computer science
Activations of Deep Convolutional Neural Network are Aligned with Gamma Band Activity of Human Visual Cortex.

Kuzovkin, Ilya; Vicente, Raul; Petton, Mathilde; Lachaux, Jean-Philippe; Baciu, Monica; Kahane, Philippe; Rheims, Sylvain; Vidal, Juan R; Aru, Jaan (2018). Communications Biology, 1:107. DOI: 10.1038/s42003-018-0110-y.

2017 | Biology
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads.

Pajuste, Fanny-Dhelia; Kaplinski, Lauris; Möls, Märt; Puurand, Tarmo; Lepamets, Maarja; Remm, Maido (2017). Scientific Reports, 7 (1):2537. DOI: 10.1038/s41598-017-02487-5.
2017 | Computer science
Outcome-Oriented Predictive Process Monitoring: Review and Benchmark.

Teinemaa, Irene; Dumas, Marlon; La Rosa, Marcello; Maggi, Fabrizio M (2017). DOI: 10.48550/arXiv.1707.06766.
2017 | Medical science
MixFit: Methodology for Computing Ancestry-Related Genetic Scores at the Individual Level and Its Application to the Estonian and Finnish Population Studies.

Haller, Toomas; Leitsalu, Liis; Fischer, Krista; Nuotio, Marja-Liisa; Esko, Tõnu; Boomsma, Dorothea Irene; Kyvik, Kirsten Ohm; Spector, Tim D; Perola, Markus; Metspalu, Andres (2017). PLoS One, 12 (1):e0170325. DOI: 10.1371/journal.pone.0170325.
2017 | Medical science
Pathogenic implications for autoimmune mechanisms derived by comparative eQTL analysis of CD4+ versus CD8+ T cells.

Kasela, Silva; Kisand, Kai; Tserel, Liina; Kaleviste, Epp; Remm, Anu; Fischer, Krista; Esko, Tõnu; Westra, Harm-Jan; Fairfax, Benjamin P; Makino, Seiko; Knight, Julian C; Franke, Lude; Metspalu, Andres; Peterson, Pärt; Milani, Lili (2017). PLoS Genet, 13 (3):e1006643. DOI: 10.1371/journal.pgen.1006643.
2017 | Chemistry
Hydrogen-Bond Donicity in DMSO and Gas Phase and Its Dependence on Brønsted Acidity.

Tshepelevitch, Sofja; Trummal, Aleksander; Haav, Kristjan; Martin, Kerli; Leito, Ivo (2017). J Phys Chem A, 121 (1):357–369. DOI: 10.1021/acs.jpca.6b11115.
2017 | Chemistry
On the Basicity of Conjugated Nitrogen Heterocycles in Different Media.

Lõkov, Märt; Tshepelevitsh, Sofja; Heering, Agnes; Plieger, Paul G; Vianello, Robert; Leito, Ivo (2017). European Journal of Organic Chemistry, 2017 (30):4475-4489. DOI: 10.1002/ejoc.201700749.
2017 | Chemistry
Method development for the analysis of resinous materials with MALDI-FT-ICR-MS: novel internal standards and a new matrix material for negative ion mode.

Teearu, A; Vahur, S; Rodima, T; Herodes, K; Bonrath, W; Netscher, T; Tshepelevitsh, S; Trummal, A; Lõkov, M; Leito, I (2017). J. Mass Spectrom, 52 (9):603-617. DOI: 10.1002/jms.3943.
2017 | Biology
Exploring Selectivity of 22 Acyclic Urea-, Carbazole- and Indolocarbazole-Based Receptors towards 11 Monocarboxylates.

Martin, Kerli; Nõges, Juuli; Haav, Kristjan; Kadam, Sandip A; Pung, Astrid; Leito, Ivo (2017). European Journal of Organic Chemistry, 2017 (35):5231–5237. DOI: 10.1002/ejoc.201700931.
2017 | Chemistry
Predicting Relative Stability of Conformers in Solution with COSMO-RS.

Pung, Astrid; Leito, Ivo (2017). J. Phys. Chem. A, 121 (36):6823-6829. DOI: 10.1021/acs.jpca.7b05197.
2017 | Chemistry
Multidentate Anion Receptors for Binding Glyphosate Dianion: Structure and Affinity.

Kadam, Sandip A; Haav, Kristjan; Toom, Lauri; Pung, Astrid; Mayeux, Charly; Leito, Ivo (2017). European Journal of Organic Chemistry, 2017 (11):1396–1406. DOI: 10.1002/ejoc.201601583.
2017 | Medical science
Personalized risk prediction for type 2 diabetes: the potential of genetic risk scores.

Läll, Kristi; Mägi, Reedik; Morris, Andrew; Metspalu, Andres; Fischer, Krista (2017). Genetics in Medicine, 19 (3):322-329. DOI: 10.1038/gim.2016.103.

2016 | Computer science
On Failing Sets of the Interval-Passing Algorithm for Compressed Sensing.

Yakimenka, Yauhen; Rosnes, Eirik (2016). 54th Annual Allerton Conference on Communication, Control, and Computing (Allerton). DOI: 10.48550/arXiv.1607.05001.
2016 | Biology
Evaluation of traditionally circumscribed species in the lichen-forming genus Usnea, section Usnea (Parmeliaceae, Ascomycota) using a six-locus dataset.

Mark, Kristiina; Saag, Lauri; Leavitt, Steven D; Will-Wolf, Susan; Nelsen, Matthew P; Tõrra, Tiiu; Saag, Andres; Randlane, Tiina; Lumbsch, Thorsten H (2016). Organisms Diversity & Evolution, 16, 497−524. DOI: 10.1007/s13127-016-0273-7.
2016 | Biology
Human Y Chromosome Haplogroup N: A Non-trivial Time-Resolved Phylogeography that Cuts across Language Families.

Ilumäe, Anne-Mai; Reidla, Maere; Chukhryaeva, Marina; Järve, Mari; Post, Helen; Karmin, Monika; Saag, Lauri; Agdzhoyan, Anastasiya; Kushniarevich, Alena; Litvinov, Sergey; Ekomasova, Natalya; Tambets, Kristiina et al (2016). American Journal of Human Genetics, 99 (1):163−173. DOI: 10.1016/j.ajhg.2016.05.025.
2016 | Biology
A recent bottleneck of Y chromosome diversity coincides with a global change in culture.

Karmin M, Saag L, Vicente M, Wilson Sayres MA, Järve M, Talas UG, Rootsi S, Ilumäe AM, Mägi R, et al (2015). Genome Research, 25(4):459-66. DOI: 10.1101/gr.186684.114.
2016 | Chemistry
Computational modeling of acrylodan-labeled cAMP dependent protein kinase catalytic subunit unfolding.

Kuznetsov, Aleksei; Kivi, Rait; Järv, Jaak (2016). Computational Biology and Chemistry, 61:197-201. DOI: 10.1016/j.compbiolchem.2016.01.004.
2016 | Chemistry
Reaction kinetics and solubility in water-organic binary solutions are governed by similar solvation equilibria.

Salmar, Siim; Vaalma, Morten; Vider, Henry; Tenno, Tiina; Kuznetsov, Aleksei; Järv, Jaak; Tuulmets, Ants (2016). Journal of Physical Organic Chemistry, 29 (3):118−126. DOI: 10.1002/poc.3507.
2016 | Medical science
Epigenetic profiling in CD4+ and CD8+ T cells from Graves’ disease patients reveals changes in genes associated with T cell receptor signaling.

Limbach, Maia; Saare, Mario; Tserel, Liina; Kisand, Kai; Eglit, Triin; Sauer, Sacha; Axelsson, Tomas; Syvänen, Ann-Christine; Metspalu, Andrus; Milani, Lili; Peterson, Pärt (2016). Journal of Autoimmunity, 67:46-56. DOI: 10.1016/j.jaut.2015.09.006.
2016 | Chemistry
Electrochemical Investigation of 1-Ethyl-3-methylimidazolium Bromide and Tetrafluoroborate Mixture at Bi (111) Electrode Interface.

Siimenson, C; Lembinen, M; Oll, O; Läll, L; Tarkanovskaja, M; Ivaništšev, V; Siinor, L; Thomberg, T; Lust, K; Lust, E (2016). Journal of The Electrochemical Society, 163 (9):H723-H730. DOI: 10.1149/2.0111609jes.
2016 | Chemistry
Interplay between the hydrophilicity of metal electrodes and their interfacial capacitance.

Ruzanov, Anton; Karu, Karl; Ivaništšev, Vladislav; Nazmutdinov, Renat R; Lust, Enn (2016). Electrochimica Acta, 210:615–621. DOI: 10.1016/j.electacta.2016.05.110.
2016 | Chemistry
Self-interaction error in DFT-based modelling of ionic liquids.

Lage-Estebanez, Isabel; Ruzanov, Anton; de la Vega, Jose MG; Fedorov, Maxim V; Ivaništšev, Vladislav B (2016). Phys. Chem. Chem. Phys, 18 (3):2175–2182. DOI: 10.1039/C5CP05922D.
2016 | Chemistry
Predictions of Physicochemical Properties of Ionic Liquids with DFT.

Karu K, Ruzanov A, Ers H, Ivaništšev V, Lage-Estebanez I, García de la Vega JM (2016). Computation, 4 (3):25. DOI: 10.3390/computation4030025.
2016 | Medical science
Cortical thickness and surface area correlates with cognitive dysfunction among first-episode psychosis patients.

Haring L, Müürsepp A, Mõttus R, Ilves P, Koch K, Uppin K, Tarnovskaja J, Maron E, Zharkovsky A, Vasar E, Vasar V (2016). Psychol Med, 46 (10):2145-55. DOI: 10.1017/S0033291716000684.
2016 | Chemistry
Experimental Basicities of Phosphazene, Guanidinophosphazene, and Proton Sponge Superbases in the Gas Phase and Solution.

Kaljurand, Ivari; Saame, Jaan; Rodima, Toomas; Koppel, Ivar; Koppel, Ilmar A; Kögel, Julius F; Sundermeyer, Jörg; Köhn, Uwe; Coles, Martyn P; Leito, Ivo (2016). Journal of Physical Chemistry A, 120 (16):2591−2604. DOI: 10.1021/acs.jpca.6b01552.
2016 | Physics
Electron-phonon interaction within classical molecular dynamics.

Tamm, A; Samolyuk, G; Correa, AA; Klintenberg, M; Aabloo, A; Caro, A (2016). Physical Review B, 94 (2). DOI: 10.1103/PhysRevB.94.024305.
2016 | Material science
Optimizing the design of 3D-pillar microbatteries using finite element modelling.

Priimägi, Priit; Brandell, Daniel; Srivastav, Shruti; Aabloo, Alvo; Kasemägi, Heiki; Zadin, Vahur (2016). Electrochimica Acta, 209 (10):138–148. DOI: 10.1016/j.electacta.2016.05.047.
2016 | Chemistry
NMR and DFT Study of the Copper(I)-Catalyzed Cycloaddition Reaction: H/D Scrambling of Alkynes and Variable Reaction Order of the Catalyst.

Kalvet, I; Tammiku-Taul, J; Mäeorg, U; Tämm, K; Burk, P; Sikk, L (2016). ChemCatChem, 8 (10):1804−1808 DOI: 10.1002/cctc.201600176.
2016 | Chemistry
Parametrization of nanoparticles: development of full-particle nanodescriptors.

Tämm, K; Sikk, L; Burk, J; Rallo, R; Pokhrel, S; Mädler, L; Scott-Fordsmand, JJ; Burk, P; Tamm, T (2016). Nanoscale, 8 (36):16243-16250. DOI: 10.1039/c6nr04376c.
2016 | Chemistry
Relative stability and proton transfer reactions of unsaturated isocyanides and cyanides.

Adamson, Aiko; Kaljurand, Ivari; Guillemin, Jean-Claude; Burk, Peeter (2016). Journal of Physical Organic Chemistry, 29 (9):452-459. DOI: 10.1002/poc.3562.
2016 | Biology
Robust Modeling and Scaffold Hopping: Case Study based on HIV Reverse Transcriptase Inhibitors Type-1 Data.

Pillai, GG; Mederos, L; Panda, CS; Gronski, A; Burk, P; Hall, CD; Katritzky, AR; Tämm, K; Karelson, M (2016). Medicinal Chemistry, 12 (6):513-26. DOI: 10.2174/1573406411666151005110141.
2016 | Biology
The paternal ancestry of Uttarakhand does not imitate the classical caste system of India.

Negi N, Tamang R, Pande V, Sharma A, Shah A, Reddy AG, Vishnupriya S, Singh L, Chaubey G, Thangaraj K (2016). J Hum Genet, 61 (2):167-72. DOI: 10.1038/jhg.2015.121.
2016 | Biology
Multi-layered population structure in Island Southeast Asians.

Mörseburg A, Pagani L, Ricaut FX, Yngvadottir B, Harney E, Castillo C, Hoogervorst T, Antao T, Kusuma P, Brucato N, Cardona A, Pierron D, Letellier T, Wee J, Abdullah S, Metspalu M, Kivisild T (2016). Eur J Hum Genet, 24 (11):1605-1611. DOI: 10.1038/ejhg.2016.60.
2016 | Biology
Malagasy Genetic Ancestry Comes from an Historical Malay Trading Post in Southeast Borneo.

Brucato N, Kusuma P, Cox MP, Pierron D, Purnomo GA, Adelaar A, Kivisild T, Letellier T, Sudoyo H, Ricaut FX (2016). Mol Biol Evol, 33 (9):2396-400. DOI: 10.1093/molbev/msw117.
2016 | Biology
HybriFree: a robust and rapid method for the development of monoclonal antibodies from different host species.

Kivi G, Teesalu K, Parik J, Kontkar E, Ustav M Jr, Noodla L, Ustav M, Männik A (2016). BMC Biotechnology, 16:2. DOI: 10.1186/s12896-016-0232-6.
2016 | Biology
Genetic heritage of Croatians in the Southeastern European gene pool-Y chromosome analysis of the Croatian continental and Island population.

Šarac J; Šaric T; Havaš Auguštin D; Novokmet N; Vekaric N; Mustac M; Grahovac B; Kapovic M; Nevajda B; Glasnovic A; Missoni S; Rootsi S; Rudan P (2016). Am J Hum Biol, 28 (6):837-845. DOI: 10.1002/ajhb.22876.
2016 | Biology
Genetic affinities of the Jewish populations of India.

Chaubey G; Singh M; Rai N; Kariappa M; Singh K; Singh A; Pratap Singh D; Tamang R; Selvi Rani D; Reddy AG; Kumar Singh V; Singh L; Thangaraj K (2016). Sci Rep, 6:19166. DOI: 10.1038/srep19166.
2016 | Biology
East Eurasian ancestry in the middle of Europe: genetic footprints of Steppe nomads in the genomes of Belarusian Lipka Tatars.

Pankratov V, Litvinov S, Kassian A, Shulhin D, Tchebotarev L, Yunusbayev B, Möls M, Sahakyan H, Yepiskoposyan L, et al (2016). Sci Rep, 6:30197. DOI: 10.1038/srep30197.
2016 | Biology
Dissecting the influence of Neolithic demic diffusion on Indian Y-chromosome pool through J2-M172 haplogroup.

Singh S, Singh A, Rajkumar R, Sampath Kumar K, Kadarkarai Samy S, Nizamuddin S, Singh A, Ahmed Sheikh S, Peddada V, Khanna V, Veeraiah P, Pandit A, Chaubey G, Singh L, Thangaraj K (2016). Sci Rep, 6:19157. DOI: 10.1038/srep19157.
2016 | Medical science
Copy number variation analysis detects novel candidate genes involved in follicular growth and oocyte maturation in a cohort of premature ovarian failure cases.

Tšuiko O, Nõukas M, Žilina O, Hensen K, Tapanainen JS, Mägi R, Kals M, Kivistik PA, Haller-Kikkatalo K, Salumets A, Kurg A (2016). Hum Reprod, 31 (8):1913-25. DOI: 10.1093/humrep/dew142.
2016 | Medical science
Single base resolution analysis of 5-hydroxymethylcytosine in 188 human genes: implications for hepatic gene expression.

Ivanov M, Kals M, Lauschke V, Barragan I, Ewels P, Käller M, Axelsson T, Lehtiö J, Milani L, Ingelman-Sundberg M (2016). Nucleic Acids Research, 44 (14):6756-69. DOI: 10.1093/nar/gkw316.
2016 | Medical science
Whole-exome sequencing identifies a potential TTN mutation in a multiplex family with inguinal hernia.

Mihailov E, Nikopensius T, Reigo A, Nikkolo C, Kals M, Aruaas K, Milani L, Seepter H, Metspalu A (2016). Hernia, 21 (1):95-100. DOI: 10.1007/s10029-016-1491-9.
2016 | Biology
Imprinted genes and imprinting control regions show predominant intermediate methylation in adult somatic tissues.

Pervjakova N, Kasela S, Morris AP, Kals M, Metspalu A, Lindgren CM, Salumets A, Mägi R (2016). Epigenomics, 8 (6):789-99. DOI: 10.2217/epi.16.8.
2016 | Biology
RNA-sequencing of WFS1-deficient pancreatic islets.

Ivask, Marilin; Hugill, Alison; Kõks Sulev (2016). Physiol Rep, 4 (7):e12750. DOI: 10.14814/phy2.12750.
2016 | Biology
Large-scale dark diversity estimates: new perspectives with combined methods.

Ronk, Argo; de Bello, Francesco; Fibich, Pavel; Pärtel, Meelis (2016). Ecology and Evolution, 6 (17): 6266-81. DOI: 10.1002/ece3.2371.
2016 | Medical science
Grey matter abnormalities in methcathinone abusers with a Parkinsonian syndrome.

Juurmaa, J; Menke, RAL; Vila, P; Müürsepp, A; Tomberg, T; Ilves, P; Nigul, M; Johansen-Berg, H; Donaghy, M; Stagg, CJ; Stepens, A; Taba, P (2016), Brain and Behavior, 6 (11):e00539. DOI: 10.1002/brb3.539.
2016 | Chemistry
The Thermodynamic Stability of Adamantylideneadamantane and Its Proton-and Electron-Exchanges. Comparison with Simple Alkenes.

Abboud, Jose-Luis M; Alkorta, Ibon; Davalos, Juan Z; Koppel, Ilmar A; Koppel, Ivar; Lenoir, Dieter; Martinez, Sonia; Mishima, Masaaki (2016). Bulletin of the Chemical Society of Japan, 89 (7):762–769. DOI: 10.1246/bcsj.20160026.
2016 | Chemistry
Acidity of Strong Acids in Water and Dimethyl Sulfoxide.

Trummal, Aleksander; Lipping, Lauri; Kaljurand, Ivari; Koppel, Ilmar; Leito, Ivo (2016). The Journal of Physical Chemistry A, 120 (20):3663−3669. DOI: 10.1021/acs.jpca.6b02253.
2016 | Biology
Genomic analyses inform on migration events during the peopling of Eurasia.

Pagani, Luca; Lawson, Daniel John; Jagoda, Evelyn; Mörseburg, Alexander; Eriksson, Anders; Mitt, Mario; Clemente, Florian; Hudjashov, Georgi; DeGiorgio, Michael; Saag, Lauri, et al (2016). Nature, 538 (7624):238-242. DOI: 10.1038/nature19792.
2016 | Medical science
Ultra-rare disruptive and damaging mutations influence educational attainment in the general population.

Ganna, Andrea; Genovese, Giulio; Howrigan, Daniel P; Byrnes, Andrea; Kurki, Mitja; Zekavat, Seyedeh M; Whelan, Christopher W; Kals, Mart et al (2016). Nature Neuroscience, 19 (12):1563−1565. DOI: 10.1038/nn.4404.
2016 | Medical science
Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.

Michael Guoa H, Satish Nandakumar K, Jacob Ulirsch C, Seyedeh Zekavat M, Jason Buenrostro D, Pradeep Natarajan, Rany Salem, Roberto Chiarle, Mario Mitt, Mart Kals, Kalle Pärn, Krista Fischer, Lili Milani, Reedik Mägi, et al (2016). Proc Natl Acad Sci USA, 114 (3):E327-E336. DOI: 10.1073/pnas.1619052114.

2015 | Biology
A recent bottleneck of Y chromosome diversity coincides with a global change in culture.

Karmin M, Saag L, Vicente M, Wilson Sayres MA, Järve M, Talas UG, Rootsi S, Ilumäe AM, Mägi R, Mitt M, Pagani L, Puurand T, et al (2015). Genome Research, 25 (4):459-66. DOI: 10.1101/gr.186684.114.
2015 | Chemistry
Basicity Limits of Neutral Organic Superbases.

Leito, Ivo; Koppel, Ilmar; Koppel, Ivar; Kaupmees, Karl; Tshepelevitsh, Sofja; Saame, Jaan (2015). Angewandte Chemie - International Edition in English, 54 (32):9262-5. DOI: 10.1002/anie.201503345.
2015 | Chemistry
Solution and Gas-Phase Acidities of all-trans (all-E) Retinoic Acid: An Experimental and Computational Study.

Abboud, Jose-Luis M; Koppel, Ilmar A; Uggerud, Einar; Leito, Ivo; Koppel, Ivar; Sekiguchi, Osamu; Kaupmees, Karl; Saame, Jaan; Kütt, Karl; Mishima, Masaaki (2015). Chemistry – A European Journal, 21 (31):11238-43. DOI: 10.1002/chem.201500717.
2015 | Chemistry
Superacidity of Closo-Dodecaborate-Based Brönsted Acids:a DFT Study.

Lipping, l; Leito, I; Koppel, I; Krossing, I; Himmel, H; Koppel, IA (2015). Journal of Physical Chemistry A, 119 (4):735-43. DOI: 10.1021/jp506485x.
2015 | Biology
Bovine sperm plasma membrane proteomics through biotinylation and subcellular enrichment.

Kasvandik, Sergo; Sillaste, Gerly; Velthut-Meikas, Agne; Mikelsaar, Aavo-Valdur; Hallap, Triin; Padrik, Peeter; Tenson, Tanel; Jaakma, Ülle; Kõks, Sulev; Salumets, Andres (2015). Proteomics, 15 (11):1906-1920. DOI: 10.1002/pmic.201400297.
2015 | Physics
Near threshold photodissociation study of EMIMBF4 vapor.

Kuusik, Ivar; Tarkanovskaja, Marta; Kruusma, Jaanus; Reedo, Valter; Välbe, Raul; Lõhmus, Ants; Kisand, Vambola; Lust, Enn; Kukk, Edwin; Nõmmiste, Ergo (2015). RSC Advances, 9, 6834−6842. DOI: 10.1039/C4RA12775G.
2015 | Biology
RegScan: a GWAS tool for quick estimation of allele effects on continuous traits and their combinations.

Haller, Toomas; Kals, Mart; Esko, Tõnu; Mägi, Reedik; Fischer, Krista (2015). Brief Bioinform, 16(1):39-44. DOI: 10.1093/bib/bbt066.
2015 | Biology
The Genetic Legacy of the Expansion of Turkic-Speaking Nomads across Eurasia.

Yunusbayev B, Metspalu M, Metspalu E, Valeev A, Litvinov S, Valiev R, et al (2015). PLoS Genet, 11 (4):e1005068. DOI: 10.1371/journal.pgen.1005068.
2015 | Biology
Y-Chromosomal Lineages of Latvians in the Context of the Genetic Variation of the Eastern-Baltic Region.

Pliss L, Timša L, Rootsi S, Tambets K, Pelnena I, Zole E, Puzuka A, Sabule A, Rozane S, Lace B, Kucinskas V, Krumina A, Ranka R, Baumanis V (2015). Ann Hum Genet, 79 (6):418-30. DOI: 10.1111/ahg.12130.
2015 | Biology
The phylogenetic and geographic structure of Y-chromosome haplogroup R1a.

Underhill PA, Poznik GD, Rootsi S, Järve M, Lin AA, Wang J, Passarelli B, Kanbar J, Myres NM, King RJ, Di Cristofaro J, Sahakyan H, Behar DM, et al (2015). Eur J Hum Genet, 23 (1):124-31. DOI: 10.1038/ejhg.2014.50.
2015 | Biology
RegScan: a GWAS tool for quick estimation of allele effects on continuous traits and their combinations.

Haller, Toomas; Kals, Mart; Esko, Tõnu; Mägi, Reedik; Fischer, Krista (2015). Brief Bioinform, 16 (1): 39–44. DOI: 10.1093/bib/bbt066.
2015 | Biology
Population genomics of Bronze Age Eurasia.

Allentoft ME, Sikora M, Sjögren KG, Rasmussen S, Rasmussen M, Metspalu M, Saag L, et al (2015). Nature, 522 (7555):167-72. DOI: 10.1038/nature14507.
2015 | Biology
POPULATION GENETICS. Genomic evidence for he Pleistocene and recent population history of Native Americans.

Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, et al (2015). Science. 349 (6250):aab3884. DOI: 10.1126/science.aab3884.
2015 | Medical science
Polymorphic variants near 1p22 and 20q11.2 loci and the risk of non-syndromic cleft lip and palate in South Indian population.

Babu Gurramkonda V, Hussain Syed A, Murthy J, Chaubey G, Bhaskar Lakkakula VK (2015). Int J Pediatr Otorhinolaryngol, 79 (12):2389-93. DOI: 10.1016/j.ijporl.2015.10.055.
2015 | Biology
Global diversity, population stratification, and selection of human copy number variation.

Sudmant PH, Sahakyan H, Kivisild T, Metspalu E, Parik J, Villems R, Metspalu M, et al (2015). Science, 349 (6253):aab3761. DOI: 10.1126/science.aab3761.
2015 | Biology
Genetic Heritage of the Balto-Slavic Speaking Populations: A Synthesis of Autosomal, Mitochondrial and Y-Chromosomal Data.

Kushniarevich A, Metspalu E, Reidla M, Tambets K, Tamm E, Metspalu M, Kivisild T, Villems R, et al (2015). PLoS One, 10 (9):e0135820. DOI: 10.1371/journal.pone.0135820.
2015 | Biology
Genetic Affinity of the Bhil, Kol and Gond Mentioned in Epic Ramayana.

Chaubey G, Kadian A, Bala S, Rao VR (2015). PLoS One, 10 (6):e0127655. DOI: 10.1371/journal.pone.0127655.
2015 | Biology
Gene Pool Similarities and Differences between Ukrainians and Russians of Slobozhanshchina on Y-Chromosome Data.

Utevska OM, Pshenichnov AS, Dibirova Kh D, Rootsi S, Agdzhoyan AT, Churnosov MI, Balanovska EV, Atramentova LA, Balanovsky OP (2015). Cytology and Genetics, 49 (4):40-50.
2015 | Biology
Fine Dissection of Human Mitochondrial DNA Haplogroup HV Lineages Reveals Paleolithic Signatures from European Glacial Refugia.

De Fanti S, Barbieri C, Sarno S, Sevini F, Vianello D, Tamm E, Metspalu E, van Oven M, Hübner A, Sazzini M, Franceschi C, Pettener D, Luiselli D (2015). PLoS One, 10 (12):e0144391. DOI: 10.1371/journal.pone.0144391.
2015 | Biology
Evaluating the genetic impact of South and Southeast Asia on the peopling of Bangladesh.

Sultana GN, Sharif MI, Asaduzzaman M, Chaubey G (2015). Leg Med (Tokyo). 17 (6):446-50. DOI: 10.1016/j.legalmed.2015.09.004.
2015 | Biology
Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago.

Rasmussen S, Allentoft ME, Nielsen K, Orlando L, Sikora M, Sjögren KG, Pedersen AG, Schubert M, Van Dam A, Kapel CM, Nielsen HB, Brunak S, Avetisyan P, Epimakhov A, Khalyapin MV, Gnuni A, Kriiska A, Lasak I, Metspalu M, et al (2015). Cell, 163 (3):571-82. DOI: 10.1016/j.cell.2015.10.009.
2015 | Medical science
Transcriptional landscape of psoriasis identifies the involvement of IL36 and IL36RN.

Keermann M, Kõks S, Reimann E, Prans E, Abram K, Kingo K (2015). BMC Genomics, 16 (1):322. DOI: 10.1186/s12864-015-1508-2.
2015 | Medical science
Expression of IL-36 family cytokines and IL-37 but not IL-38 is altered in psoriatic skin.

Keermann M, Kõks S, Reimann E, Abram K, Erm T, Silm H, Kingo K (2015). J Dermatol Sci, 80 (2):150-2. DOI: 10.1016/j.jdermsci.2015.08.002.
2015 | Medical science
Smoking-induced expression of the GPR15 gene indicates its potential role in chronic inflammatory pathologies.

Kõks G, Uudelepp ML, Limbach M, Peterson P, Reimann E, Kõks S (2015). Am J Pathol, 187 (11):2898-906. DOI: 10.1016/j.ajpath.2015.07.006.
2015 | Biology
Applying the dark diversity concept to plants at the European scale.

Ronk, Argo; Szava-Kovats, Robert; Pärtel, Meelis (2015). Ecography, 38 (10):1015-1025. DOI: 10.1111/ecog.01236.
2015 | Chemistry
A kinetic view of the mechanism of the Grignard reaction with alkoxysilanes.

Ploom, Anu; Tuulmets, Ants; Panov, Dmitri; Burk, Peeter (2015). Phosphorus, sulfur, and silicon and the related elements, 190 (4):509−519. DOI: 10426507.2014.952002.
2015 | Chemistry
Effect of strain on gas-phase basicity of (E)-1-methyl-2-(1-methyl-2-adamantylidene) adamantane.

Kekišev, Ott; Kaljurand, Ivari; Toom, Lauri; Lenoir, Dieter; Burk, Peeter; Järv, Jaak (2015). Journal of Physical Organic Chemistry, 28 (7):447−451. DOI: 10.1002/poc.3435.
2015 | Chemistry
Proton transfer reactions of hydrazine-boranes.

Adamson, Aiko; Guillemin, Jean-Claude; Burk, Peeter (2015). Journal of Physical Organic Chemistry, 28 (4):244−249. DOI: 10.1002/poc.3401.
2015 | Biology
Theoretical Modeling of HPV: QSAR and Novodesign with Fragment Approach.

Pillai, Girinath G; Sikk, Lauri; Tamm, Tarmo; Karelson, Mati; Burk, Peeter; Tamm, Kaido (2015). Current Computer Aided-Drug Design, 10 (4):303−314. DOI: 10.2174/1574886309666141126145756.
2015 | Chemistry
Towards the Discrimination of Carboxylates by Hydrogen-Bond Donor Anion Receptors.

Kadam, Sandip A; Martin, Kerli; Haav, Kristjan; Toom, Lauri; Mayeux, Charly; Pung, Astrid; Gale, Philip, A; Hiscock, Jennifer R; Brooks, Simon J; Kirby, Isabelle L; Busschaert, Nathalie; Leito, Ivo (2015). Chemistry – A European Journal, 21 (13):5145−5160. DOI: 10.1002/chem.201405858.
2015 | Chemistry
Conformational Switching of a Foldamer in a Multicomponent System by pH-Filtered Selection between Competing Noncovalent Interactions.

Brioche, Julien; Pike, Sarah; Tshepelevitsh, Sofa; Leito, Ivo; Morris, Gareth A; Webb, Simon J; Clayden, Jonathan (2015). Journal of the American Chemical Society, 137 (20):6680−6691. DOI: 10.1021/jacs.5b03284.

2014 | Biology
85 Low-Molecular-Weight Metabolites In Bovine In Vitro Production Culture Media As Embryo Quality Markers.

Nomm, Monika; Mark, Elina; Kilk, Kalle; Koks, Sulev; Jaakma, Ulle (2014). In: Reproduction, Fertility and Development 27 (1):135-136. DOI: 10.1071/RDv27n1Ab85.
2014 | Biology
Unravelling the distinct strains of Tharu ancestry.

Chaubey G, Singh M, Crivellaro F, Tamang R, Nandan A, Singh K, Sharma VK, Pathak AK, Shah AM, et al (2014). European Journal of Human Genetics, 22 (12):1404-12. DOI: 10.1038/ejhg.2014.36.
2014 | Physics
GoWo band structure of CdWO4.

Laasner, Raul (2014). J. Phys. Condens. Matter, 26 (12):125503. DOI: 10.1088/0953-8984/26/12/125503.
2014 | Biology
Standing at the Gateway to Europe – The Genetic Structure of Western Balkan Populations Based on Autosomal and Haploid Markers.

Kovacevic L, Tambets K, Ilumäe AM, Kushniarevich A, Yunusbayev B, Solnik A, Bego T, Primorac D, Skaro V, et al (2014). PLoS One, 9 (8):e105090. DOI: 10.1371/journal.pone.0105090.
2014 | Biology
The genome of a Late Pleistocene human from a Clovis burial site in western Montana.

Rasmussen M, Anzick SL, Waters MR, Skoglund P, DeGiorgio M, Stafford TW Jr, Rasmussen S, Moltke I, et al (2014). Nature, 506 (7487):225-229. DOI: 10.1038/nature13025.
2014 | Chemistry
Influence of Redoping on Electrochemical Properties of the Polypyrrole films.

Raudsepp, Terje; Marandi, Margus; Sammelselg, Väino; Tamm, Tarmo; Tamm, Jüri (2014). Electrochimica Acta, 122. DOI: 10.1016/j.electacta.2013.08.083.
2014 | Medical science
Parkinson’s disease in GTP cyclohydrolase 1 mutation carries.

Mencacci, NE; Isaias, IU; Reich, MM; Ganos, C; Plagnol, V; Polke, JM; Bras, J; Hersheson, J; Stamelou, M; Pittman, AM; Noyce, AJ; Mok, KY; Opladen, T; Kunstmann, E, et al (2014). Brain, 137 (Pt 9):2480-92. DOI: 10.1093/brain/awu179.
2014 | Biology
Melanocytes in the skin – comparative whole transcriptome analysis of main skin cell types.

Reemann, P; Reimann, E; Ilmjärv, S; Porosaar, O; Silm, H; Jaks, V; Vasar, E; Kingo, K; Kõks, S (2014). PLoS ONE, 9(12), e115717. DOI: 10.1371/journal.pone.0115717.
2014 | Biology
Sequencing and annotated analysis of full genome of Holstein breed bull.

Kõks, S; Reimann, E; Lilleoja, R; Lättekivi, F; Salumets, A; Reemann, P; Jaakma, Ü (2014). Mammalian genome, 25 (7-8):363-373. DOI: 10.1007/s00335-014-9511-5.
2014 | Medical science
Whole exome sequencing of a single osteosarcoma case – integrative analysis with whole transcriptome RNA-seq data.

Reimann, Ene; Kõks, Sulev; Ho, Xuan; Maasalu, Katre; Märtson, Aare (2014). Human Genomics, 8 (20):20. DOI: 10.1186/s40246-014-0020-0.
2014 | Medical science
Comparison of the metabolic syndrome risk in valproate-treated patients with epilepsy and the general population in Estonia.

Rakitin, A; Eglit, T; Kõks, S; Lember, M; Haldre, S (2014). PLoS ONE, 9 (7), e103856. DOI: 10.1371/journal.pone.0103856.
2014 | Medical science
Using RNA sequencing for identifying gene imprinting and random monoallelic expression in human placenta.

Metsalu, Tauno; Viltrop, Triin; Tiirats, Airi; Rajashekar, Balaji; Reimann, Ene; Kõks, Sulev; Rull, Kristiina; Milani, Lili; Acharya, Ganesh; Basnet, Purusotam; Vilo, Jaak; Mägi, Reedik; Metspalu, Andres; Peters, Maire; Haller-Kikkatalo, Kadri; Salumets, Andres (2014). Epigenetics, 9 (10):1397-1409. DOI: 10.4161/15592294.2014.970052.
2014 | Medical science
Energy metabolism and thyroid function of mice with deleted wolfram in (Wfs1) gene.

Noormets, Klari; Kõks, Sulev; Ivask, Marilin; Aunapuu, Marina; Arend, Andres; Vasar, Eero; Tillmann, Vallo (2014). Experimental and Clinical Endocrinology of Diabetes, 122 (5):281-286. DOI: 10.1055/s-0034-1372582.
2014 | Medical science
Effect of Chronic Valproic Acid Treatment on Hepatic Gene Expression Profile in Wfs1 Knockout Mouse.

Punapart, Marite; Eltermaa, Mall; Oflijan, Julia; Sütt, Silva; Must, Anne; Kõks, Sulev; Schalkwyk, Leonard C; Fernandes, Catherine; Vasar, Eero; Soomets, Ursel; Terasmaa, Anton (2014). PPAR Research, 2014:349525. DOI: 10.1155/2014/349525.
2014 | Biology
Trib3 is developmentally and nutritionally regulated in the brain but is dispensable for spatial memory, fear conditioning and sensing of amino acid-imbalanced diet.

Örd, Tiit; Innos, Jürgen; Lilleväli, Kersti; Tekko, Triin; Sütt, Silva; Örd, Daima; Kõks, Sulev; Vasar, Eero; Örd, Tõnis (2014). PLoS ONE, 9 (4):e94691. DOI: 10.1371/journal.pone.0094691.
2014 | Medical science
Whole Transcriptome Analysis (RNA Sequencing) of Peripheral Blood Mononuclear Cells of Vitiligo Patients.

Reimann, Ene; Kingo, Külli; Karelson, Maire; Reemann, Paula; Vasar, Eero; Silm, Helgi; Kõks, Sulev (2014). Dermatopathology, 1 (1):11-23. DOI: 10.1159/000357402.
2014 | Medical science
Expression of Class II Cytokine Genes in Children’s Skin.

Reemann, P; Reimann, E; Suutre, S; Paavo, M; Loite, U; Porosaar, O; Abram, K; Silm, H; Vasar, E; Kõks, S; Kingo, K (2014). Acta Dermato-Venereologica, 94 (4):386-392. DOI: 10.2340/00015555-1717.
2014 | Medical science
Whole exome sequencing of a single osteosarcoma case – integrative analysis with whole transcriptome RNA-seq data.

Reimann E, Kõks S, Ho XD, Maasalu K, Märtson A (2014). Human Genomics, 8 (1):20. DOI: 10.1186/s40246-014-0020-0.
2014 | Biology
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans.

Raghavan M, Skoglund P, Graf KE, Metspalu M, Albrechtsen A, Moltke I, Rasmussen S, Stafford TW Jr, Orlando L, Metspalu E, et al (2014). Nature, 505 (7481):87-91. DOI: 10.1038/nature12736.

2013 | Biology
No Evidence from Genome-Wide Data of a Khazar Origin for the Ashkenazi Jews.

Behar DM, Metspalu M, Baran Y, Kopelman NM, Yunusbayev B, Gladstein A, Tzur S, Sahakyan H, Bahmanimehr A, Yepiskoposyan L, Tambets K, et al (2013). Human Biology, 85 (6):859-900. DOI: 10.3378/027.085.0604.
2013 | Biology
The Andaman Islanders in a Regional Genetic Context: Reexamining the Evidence for an Early Peopling of the Archipelago from South Asia.

Gyaneshwer, Chaubey; Phillip, Endicott (2013). Human Biology, 85 (1-3):153-72. DOI: 10.3378/027.085.0307.
2013 | Biology
The Light Skin Allele of SLC24A5 in South Asians and Europeans Shares Identity by Descent.

Basu Mallick C, Iliescu FM, Möls M, Hill S, Tamang R, Chaubey G, Goto R, Ho SY, Gallego Romero I, Crivellaro F, et al (2013). PLoS Genet 9 (11):e1003912. DOI: 10.1371/journal.pgen.1003912.
2013 | Chemistry
Hydration Properties of Ligands and Drugs in Protein Binding Sites: Tightly-Bound, Bridging Water Molecules and Their Effects and Consequences on Molecular Design Strategies.

Garcia-Sosa, Alfonso T (2013). Journal of Chemical Information and Modeling, 53 (6):1388-405. DOI: 10.1021/ci3005786.
2013 | Astronomy
Evidence for spin alignment of spiral and elliptical/S0 galaxies in filaments.

Tempel, E; Stoica, RS; Saar, E (2013). Monthly Notices of the Royal Astronomical Society, 428 (2):1827-1836. DOI: 10.1093/mnras/sts162.
2013 | Medical science
Identification of seven loci affecting mean telomere length and their association with disease.

Codd V, Nelson CP, Albrecht E, Mangino M, Deelen J, Buxton JL, Hottenga JJ, Fischer K, Esko T, et al (2013). Nature Genetics, 45 (4):422-427. DOI: 10.1038/ng.2528.
2013 | Physics
First-principles calculations of structural and electronic properties of pure and Tm^2+ -doped SrCl2.

Ma, C-G; Brik, MG (2013). Physica Status Solidi B, 250 (4):858–863. DOI: 10.1002/pssb.201200741.
2013 | Medical science
Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.

den Hoed M, Eijgelsheim M, Esko T, Brundel BJ, Peal DS, Evans DM, Nolte IM, Segre AV, Holm H, Handsaker RE, et al (2013). Nature Genetics, 45 (6):621-31. DOI: 10.1038/ng.2610.
2013 | Chemistry
Kinetic sonication effects in light of molecular dynamics simulation of the reaction medium.

Salmar S, Kuznetsov A, Tuulmets A, Järv J, Piiskop S (2013). Ultrasonics Sonochemistry, 20 (2):703-707. DOI: 10.1016/j.ultsonch.2012.10.010.
2013 | Chemistry
Kinetic sonication effects in aqueous acetonitrile solutions. Reaction rate levelling by ultrasound.

Piiskop S, Salmar S, Tuulmets A, Kuznetsov A, Järv J (2013). Ultrasonics Sonochemistry, 20 (6):1414–1418. DOI: 10.1016/j.ultsonch.2013.03.014.
2013 | Chemistry
Relativistic Effects on Acidities and Basicities of Brønsted Acids and Bases Containing Gold.

Koppel, Ilmar A; Burk, Peeter; Kasemets, Kalev; Koppel, Ivar (2013). Physical Chemistry Chemical Physics, 15 (41):17971-5. DOI: 10.1039/c3cp52435c.
2013 | Chemistry
Choosing superbases for extending the experimental gas-phase basicity scale.

Kaljurand, Ivari; Rodima, Toomas; Koppel, Ivar; Koppel, Ilmar A; Saame, Jaan; Leito, Ivo; Kögel, Julius; Sundermeyer, Jörg (2013). In: Book of Abstracts: 14th European Symposium on Organic Reactivity, Prague, Czech Republic.
2013 | Chemistry
Additivity of substituent effects on the acidity of alcohols.

Abboud, J-L; Koppel, IA; Koppel, I (2013). Journal of Physical Organic Chemistry, 26 (6):467-472. DOI: 10.1002/poc.3110.
2013 | Chemistry
Acidities of strong neutral Brønsted acids in different media.

Raamat, E; Kaupmees, K; Ovsjannikov, G; Trummal, A; Kütt, A; Saame, J; Koppel, I; Kaljurand, I; Lipping, L; Rodima, T; Pihl, V; Koppel IA; Leito, I (2013). Journal of Physical Organic Chemistry, 26 (2):162-170. DOI: 10.1002/poc.2946.
2013 | Chemistry
The basicity of substituted N,N-dimethylanilines in solution and in the gas phase.

Kaljurand, Ivari; Lilleorg, Roman; Murumaa, Algis; Mishima, Masaaki; Burk, Peeter; Koppel, Ivar; Koppel, Ilmar A; Leito, Ivo (2013). Journal of Physical Organic Chemistry, 26 (2):171-181. DOI: 10.1002/poc.2956.
2013 | Biology
Effects Of Culture Conditions And Gene Transfection On The Development Of Bovine Somatic Cell Nuclear Transfer Embryos.

Parn, Pille; Plaas, Mario; Nomm, Monika; Jaakma, Ulle; Kõks, Sulev (2013). In: Reproduction Fertility And Development: IETS, Hannover, Germany. Csiro Publishing.
2013 | Biology
Veise embrüote kasvatamine laboris.

Nõmm, Monika; Pärn, Pille; Kavak, Ants; Jaakma, Ülle; Kõks, Sulev (2013). Konverentsi “Terve loom ja tervislik toit 2013” kogumik. Tartu, Eesti Maaülikool.
2013 | Medical science
Transcriptomic profiling of skin from Parkinson’s Disease patients.

Planken, Anu; Kadastik-Eerme, Liis; Kurvits, Lille; Reimann, Ene; Kõks, Sulev; Taba, Pille (2013). XX World Congress on Parkinson’s Disease and Related Disorders; Geneva, Swizerland.
2013 | Medical science
Transcriptome analysis of osteosarcoma identifies suppression of wnt pathway and up-regulation of adiponectin as potential biomarker.

Märtson, Aare; Kõks, Sulev; Reimann, Ene; Prans, Ele; Erm, Triin; Maasalu, Katre (2013). Genomics Discovery, 1 (3). DOI: 10.7243/2052-7993-1-3.
2013 | Medical science
Wfs1-deficient mice display altered function of serotonergic system and increased behavioural response to antidepressants.

Visnapuu, T; Raud, S; Loomets, M; Reimets, R: Sütt, S; Luuk, H; Plaas, M; Kõks, S; Volke, V; Alttoa, A; Harro, J; Vasar, E (2013). Frontiers in Neuroscience, 7 (132):1-8. DOI: 10.3389/fnins.2013.00132.
2013 | Medical science
The incidence-based and pathogen-based disability-adjusted life-years approach for measuring infectious disease burden in Europe: the Burden of Communicable Diseases in Europe (BCoDE) project.

Plass, Dietrich; Mangen, Marie-Josée; Havelaar, Arie H; Gibbons, Cheryl; Haagsma, Juanita; Jahn, Beate; Lai, Taavi; van Lier, Alies; Longhi, Silvia; McDonald, Scott A; Kraemer, Alexander; Kramarz, Piotr; Cassini, Alessandro; Kretzschmar, Mirjam E (2013). The Lancet, 381, S114. DOI: 10.1016/S0140-6736(13)61368-9.
2013 | Medical science
Fibroblast growth on micro- and nanopatterned surfaces prepared by a novel sol-gel phase separation method.

Reemann, Paula; Kangur, Triin; Pook, Martin; Paalo, Madis; Nurmis, Liis; Kink, Ilmar; Porosaar, Orm; Kingo, Külli; Vasar, Eero; Kõks, Sulev; Jaks, Viljar; Järvekülg, Martin (2013). Journal of Materials Science: Materials in Medicine, 24 (3):783-92. DOI: 10.1007/s10856-012-4829-6.
2013 | Medical science
Increased placental expression and maternal serum levels of apoptosis-inducing TRAIL in recurrent miscarriage.

Rull, Kristiina; Tomberg, Kärt; Kõks, Sulev; Männik, Jaana; Möls, Märt; Sirotkina, Meeli; Värv, Signe; Laan, Maris (2013). Placenta, 34 (2):141-148. DOI: 10.1016/j.placenta.2012.11.032.
2013 | Medical science
Peripheral blood RNA gene expression profiling in patients with bacterial meningitis.

Lill, M; Kõks, S; Soomets, U; Schalkwyk, LC; Fernandes, C; Lutsar, I; Taba, P (2013). Frontiers in Neuroscience, 7 (33). DOI: 10.3389/fnins.2013.00033.
2013 | Medical science
Evidence for impaired function of dopaminergic system in Wfs1-deficient mice.

Visnapuu, T; Plaas, M; Reimets, R; Raud, S; Terasmaa, A; Kõks, S; Sütt, S; Luuk, H; Hundahl, CA; Eskla, K-L; Altpere, A; Alttoa, A; Harro, J; Vasar, E (2013). Behavioural Brain Research, 244:90-99. DOI: 10.1016/j.bbr.2013.01.046.
2013 | Medical science
Silencing of the WFS1 gene in HEK cells induces pathways related to neurodegeneration and mitochondrial damage.

Kõks, S; Overall, RW; Ivask, M; Soomets, U; Guha, M; Vasar, E; Fernandes, C; Schalkwyk, LC (2013). Physiological genomics, 45 (5):182-190. DOI: 10.1152/physiolgenomics.00122.2012.
2013 | Biology
Gene Expression Analysis of the Corticotrophin-releasing Hormone-proopiomelanocortin System in Psoriasis Skin Biopsies.

Loite, U; Kingo, K; Reimann, E; Reemann, P; Vasar, E; Silm, H; Kõks, S (2013). Acta Dermato-Venereologica, 93(4):400-5. DOI: 10.2340/00015555-1524.
2013 | Biology
Metkatinoon ja mangaan vähendavad dopamiin-D2 retseptorite funktsiooni – in vivo SPECT uuring hiirtel.

Asser, A; Raki, M; Juurmaa, J; Krispin, V; Muldmaa, M; Põldsepp, S; Rätsep, H; Männistö, P; Kõks, S; Bergström, K; Taba, P (2013). Eesti Arst, 91 (lisa 1):22-23.
2013 | Medical science
Copy number variations in IL22 gene are associated with psoriasis vulgaris.

Prans, Ele; Kingo, Külli; Traks, Tanel; Silm, Helgi; Vasar, Eero; Kõks, Sulev (2013). Human Immunology, 74 (6):792-5. DOI: 10.1016/j.humimm.2013.01.006.
2013 | Biology
Lsamp(-/-) mice display lower sensitivity to amphetamine and have elevated 5-HT turnover.

Innos, Jürgen; Leidmaa, Este; Philips, Mari-Anne; Sütt, Silva; Alttoa, Aet; Harro, Jaanus; Kõks, Sulev; Vasar, Eero (2013). Biochemical and Biophysical Research Communications, 430 (1):413-8. DOI: 10.1016/j.bbrc.2012.11.077.

2012 | Biology
Empria formosana sp. n. from Taiwan with notes on E. wui species group (Hymenoptera, Tenthredinidae).

Prous, Marko; Heidemaa, Mikk (2012). Deutsche Entomologische Zeitschrift, 59 (2):249-257. DOI: 10.1002/mmnd.201200021.
2012 | Chemistry
DrugLogit: Logistic Discrimination between Drugs and Nondrugs Including Disease-Specificity by Assigning Probabilities Based on Molecular Properties.

García-Sosa, Alfonso T; Oja, Mare; Hetenyi, Csaba; Maran, Uko (2012). J. Chem. Inf. Model, 52 (8):2165-2180. DOI: 10.1021/ci200587h.
2012 | Biology
Phylogenetic and Functional Metagenomic Profiling for Assessing Microbial Biodiversity in Environmental Monitoring.

Kisand V, Valente A, Lahm A, Tanet G, Lettieri T (2012). PLoS ONE, 7 (8):e43630. DOI: 10.1371/journal.pone.0043630.
2012 | Chemistry
First-principles calculations of hydrostatic pressure effects on the structural, elastic and thermodynamic properties of cubic monocarbides XC (X = Ti, V, Cr, Nb, Mo, Hf).

Krasnenko, V; Brik, MG (2012). Solid State Sciences, 14 (10): 1431-1444. DOI: 10.1016/j.solidstatesciences.2012.08.007.
2012 | Biology
Genome-wide meta-analysis of common variant differences between men and women.

Boraska V, Jeroncic A, Colonna V, Southam L, Nyholt DR, Rayner NW, Perry JR, Toniolo D, Albrecht E, Ang W, et al (2012). Hum. Mol. Genet, 21(21):4805-15. DOI: 10.1093/hmg/dds304.
2012 | Medical science
Integration of genome-wide association studies with biological knowledge identifies six novel genes related to kidney function.

Chasman DI, Fuchsberger C, Pattaro C, Teumer A, Böger CA, Endlich K, Olden M, Chen MH, Tin A, Taliun D, et al (2012). Hum. Mol. Genet, 21(24):5329-43. DOI: 10.1093/hmg/dds369.
2012 | Medical science
Evidence of Inbreeding Depression on Human Height.

McQuillan R, Eklund N, Pirastu N, Kuningas M, McEvoy BP, et al (2012). PLoS Genet, 8 (7):e1002655. DOI: 10.1371/journal.pgen.1002655.
2012 | Medical science
Genome-Wide Association and Functional Follow-Up Reveals New Loci for Kidney Function.

Pattaro C, Köttgen A, Teumer A, Garnaas M, Böger CA, Fuchsberger C, Olden M, Chen MH, Tin A, Taliun D, et al (2012). PLoS Genet, 8 (3):e1002584. DOI: 10.1371/journal.pgen.1002584.
2012 | Medical science
Large-scale association analyses identify new loci influencing glycemic traits and provide insight into the underlying biological pathways.

Scott RA, Lagou V, Welch RP, Wheeler E, Montasser ME, Luan J, Mägi R, Strawbridge RJ, Rehnberg E, Gustafsson S, et al (2012). Nature Genetics, 44 (9):991–1005. DOI: 10.1038/ng.2385.
2012 | Medical science
Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.

Stolk L, Perry JR, Chasman DI, He C, Mangino M, Sulem P, Barbalic M, Broer L, Byrne EM, Ernst F, Esko T, et al (2012). Nature Genetics, 44 (3):260–268. DOI: 10.1038/ng.1051.
2012 | Medical science
Large scale international replication and meta-analysis study confirms association of the 15q14 locus with myopia. The CREAM consortium.

Verhoeven VJ, Hysi PG, Saw SM, Vitart V, Mirshahi A, Guggenheim JA, Cotch MF, Yamashiro K, Baird PN, et al (2012). Hum Genet, 131 (9):1467-80. DOI: 10.1007/s00439-012-1176-0.
2012 | Medical science
FTO genotype is associated with phenotypic variability of body mass index.

Yang J, Loos RJ, Powell JE, Medland SE, Speliotes EK, Chasman DI, Rose LM, Thorleifsson G, Steinthorsdottir V, Mägi R, Waite L, et al (2012). Nature, 490 (7419):267-72. DOI: 10.1038/nature11401.
2012 | Medical science
Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.

arcOGEN Consortium; arcOGEN Collaborators; Zeggini E, Panoutsopoulou K, Southam L, Rayner NW, Day-Williams AG, et al (2012). Lancet, 380 (9844):815-23. DOI: 10.1016/S0140-6736(12)60681-3.
2012 | Medical science
Meta-analysis of genome-wide association studies for personality.

de Moor MH, Costa PT, Terracciano A, Krueger RF, de Geus EJ, Toshiko T, Penninx BW, Esko T, Madden PA, Derringer J, et al (2012). Molecular Psychiatry, 17(3):337-49. DOI: 10.1038/mp.2010.128.
2012 | Medical science
Meta-analysis of genome-wide association studies for personality.

de Moor MH, Costa PT, Terracciano A, Krueger RF, de Geus EJ, Toshiko T, Penninx BW, Esko T, Madden PA, Derringer J, et al (2012). Mol Psychiatry, 17 (3):337-49. DOI: 10.1038/mp.2010.128.
2012 | Medical science
Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.

Morris AP, Voight BF, Teslovich TM, Ferreira T, Segrè AV, Steinthorsdottir V, Strawbridge RJ, Khan H, et al (2012). Nature Genetics, 44 (9):981–990. DOI: 10.1038/ng.2383.
2012 | Biology
m:Explorer – multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence.

Reimand, Jüri; Aun, Anu; Vilo, Jaak; Vaquerizas, Juan M; Sedman, Juhan; Luscombe, Nicholas M (2012). Genome Biology, 13 (6):R55. DOI: 10.1186/gb-2012-13-6-r55.
2012 | Physics
Modification of the structural and electronic properties of graphene by the benzene molecule adsorption.

Krasnenko, Veera; Kikas, Jaak; Brik, Mikhail G (2012). Physica B: Condensed Matter, 407 (23):4557-4561. DOI: 10.1016/j.physb.2012.08.019.
2012 | Astronomy
SDSS DR7 superclusters. The catalogues.

Liivamägi, LJ; Tempel, E; Saar, E (2012). Astronomy & Astrophysics, 539, A80. DOI: 10.1051/0004-6361/201016288.
2012 | Chemistry
A New Class of Organosuperbases, N-Alkyl- and N-Aryl-1,3-dialkyl-4,5-dimethylimidazol-2-ylidene Amines: Synthesis, Structure, pK(BH+) Measurements, and Properties.

Kunetskiy, RA; Polyakova, SM; Vavrik, J; Cisarova, I; Saame, J; Nerut, ER; Koppel, I; Koppel, IA; Kütt, A; Leito, I; Lyapkalo, IM (2012). Chemistry – A European Journal, 18(12):3621-30. DOI: 10.1002/chem.201102249.
2012 | Biology
The Caucasus as an asymmetric semipermeable barrier to ancient human migrations.

Yunusbayev B, Metspalu M, Järve M, Kutuev I, Rootsi S, Metspalu E, Behar DM, Varendi K, Sahakyan H, et al (2012). Mol Biol Evol, 29 (1):359-65. DOI: 10.1093/molbev/msr221.
2012 | Material science
Molecular Dynamics simulations of EMI-BF4 in nanoporous carbon actuators.

Soolo, Endel; Brandell, Daniel; Liivat, Anti; Kasemägi, Heiki; Tamm, Tarmo; Aabloo, Alvo (2012). Journal of Molecular Modeling, 18 (4):1541-52. DOI: 10.1007/s00894-011-1182-5.

2011 | Biology
Shared and Unique Components of Human Population Structure and Genome-Wide Signals of Positive Selection in South Asia.

Metspalu M, Romero IG, Yunusbayev B, Chaubey G, Mallick CB, Hudjashov G, Nelis M, Mägi R, et al (2011). The American Journal of Human Genetics, 89 (6):731-44. DOI: 10.1016/j.ajhg.2011.11.010.
2011 | Medical science
Neuroglobin-Deficiency Exacerbates Hif1A and c-FOS Response, but Does Not Affect Neuronal Survival during Severe Hypoxia In Vivo.

Hundahl CA, Luuk H, Ilmjärv S, Falktoft B, Raida Z, Vikesaa J, Friis-Hansen L, Hay-Schmidt A (2011). PLoS ONE, 6 (12):e28160. DOI: 10.1371/journal.pone.0028160.
2011 | Biology
Elurikkuse informaatika.

Kõljalg, Urmas; Abarenkov, Kessy. Teadusmõte Eestis (VI). Elu ja Maateadused. Eesti Teaduste Akadeemia. Tallinn 2011.
2011 | Material science
Branched polyethylene/poly(ethylene oxide) as a host matrix for Li-ion battery electrolytes: an MD study.

Brandell, Daniel; Priimägi, Priit; Kasemägi, Heiki; Aabloo, Alvo (2011). Electrochimica Acta, 57:228-236. DOI: 10.1016/j.electacta.2011.03.022.
2011 | Material science
Modelling Polymer Electrolytes for 3D-Microbatteries using Finite Element Analysis.

Zadin, Vahur; Brandell, Daniel (2011). Electrochimica Acta, 57:237-243. DOI: 10.1016/j.electacta.2011.03.026.
2011 | Material science
Finite element modelling of ion transport in the electrolyte of a 3D-microbattery.

Zadin, Vahur; Kasemägi, Heiki; Aabloo, Alvo; Thomas, John O; Brandell Daniel (2011). Solid State Ionics, 192 (1):279-283. DOI: 10.1016/j.ssi.2010.02.007.
2011 | Biology
Population Genetic Structure in Indian Austroasiatic Speakers: The Role of Landscape Barriers and Sex-Specific Admixture.

Chaubey G, Metspalu M, Choi Y, Mägi R, Romero IG, Soares P, van Oven M, Behar DM, Rootsi S, et al (2011). Mol Biol Evol, 28 (2):1013-1024. DOI: 10.1093/molbev/msq288.
2011 | Chemistry
Combined Approach using Ligand Efficiency, Cross-Docking, and Anti-Target Hits for Wild-Type and Drug-Resistant Y181C HIV-1 Reverse Transcriptase.

García-Sosa, Alfonso T; Sild, Sulev; Takkis, Kalev; Maran Uko (2011). Journal of Chemical Information and Modeling, 51 (10):2595-2611. DOI: 10.1021/ci200203h.
2011 | Medical science
Genome-wide association analysis identifies variants associated with nonalcoholic fatty liver disease that have distinct effects on metabolic traits.

Speliotes EK, Yerges-Armstrong LM, Wu J, Hernaez R, Kim LJ, Palmer CD, Gudnason V, Eiriksdottir G, et al (2011). PLoS Genet, 7 (3):e1001324. doi: 10.1371/journal.pgen.1001324.
2011 | Medical science
Genome-wide association and genetic functional studies identify autism susceptibility candidate 2 gene (AUTS2) in the regulation of alcohol consumption.

Schumann G, Coin LJ, Lourdusamy A, Charoen P, Berger KH, Stacey D, Desrivières S, Aliev FA, Khan AA, Amin N, et al (2011). Proc Natl Acad Sci USA, 108 (17):7119-24. DOI: 10.1073/pnas.
2011 | Medical science
A Variant in MCF2L Is Associated with Osteoarthritis.

Day-Williams AG, Southam L, Panoutsopoulou K, Rayner NW, Esko T, Estrada K, Helgadottir HT, Hofman A, Ingvarsson T, et al (2011). Am J Hum Genet, 89 (3):446-50. DOI: 10.1016/j.ajhg.2011.08.001.
2011 | Medical science
Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.

International Consortium for Blood Pressure Genome-Wide Association Studies; Ehret GB, Munroe PB, Rice KM, Bochud M, et al (2011). Nature, 478 (7367):103-9. DOI: 10.1038/nature10405.
2011 | Medical science
Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.

Wain LV, Verwoert GC, O’Reilly PF, Shi G, Johnson T, Johnson AD, Bochud M, Rice KM, Henneman P, Smith AV, et al (2011). Nat Genet, 43 (10):1005-11. DOI: 10.1038/ng.922.
2011 | Astronomy
The cosmic web for density perturbations of various scales.

Suhhonenko, I; Einasto, J; Liivamägi, LJ; Saar, E; Einasto, M; Hütsi, G; Müller, V; Starobinsky, AA; Tago, E; Tempel, E (2011). Astronomy & Astrophysics, 531, A149. DOI: 10.1051/0004-6361/201016394.
2011 | Astronomy
Wavelet analysis of the cosmic web formation.

Einasto, J; Hütsi, G; Saar, E; Suhhonenko, I; Liivamägi, LJ; Einasto, M; Müller, V; Starobinsky, AA; Tago, E; Tempel, E (2011). Astronomy & Astrophysics, 531, A75. DOI: 10.1051/0004-6361/201016070.
2011 | Astronomy
Towards understanding the structure of voids in the cosmic web.

Einasto, J; Suhhonenko, I; Hütsi, G; Saar, E; Einasto, M; Liivamägi, LJ; Müller, V; Starobinsky, AA; Tago, E; Tempel, E (2011). Astronomy & Astrophysics, 2011, 534, A128. DOI: 10.1051/0004-6361/201117248.
2011 | Chemistry
Equilibrium acidities of superacids.

Kütt A, Rodima T, Saame J, Raamat E, Mäemets V, Kaljurand I, Koppel IA, Garlyauskayte RY, Yagupolskii YL, Yagupolskii LM, Bernhardt E, Willner H, Leito I (2011). J Org Chem. 76 (2):391-5. DOI: 10.1021/jo101409p.
2011 | Chemistry
Acidity of Anilines: Calculations vs Experiment.

Lipping, Lauri; Kütt, Agnes; Kaupmees, Karl; Koppel, Ivar; Burk, Peeter; Leito, Ivo; Koppel, Ilmar A (2011). Journal of Physical Chemistry A, 115 (37):10335-44. DOI: 10.1021/jp204064q.
2011 | Chemistry
Calculations of pKa of Superacids in 1,2-Dichloroethane.

Trummal, A; Rummel, A; Lippmaa, E; Koppel, I; Koppel, IA (2011). Journal of Physical Chemistry A, 115 (24):6641-5. DOI: 10.1021/jp202434p.

2010 | Chemistry
Polytrifluoromethylation versus Polyfluorination of the Isomers of Kekule Benzene and Phenol: A Theoretical Study.

Lipping, Lauri; Koppel, Ivar; Koppel, Ilmar A; Kolomeitsev, Alexander; Röschenthaler, Gerd-Volker; Leito, Ivo (2010). Journal of Organic Chemistry, 75 (19):6436-6444. DOI: 10.1021/jo101061u.
2010 | Medical science
Insights into the genetic architecture of osteoarthritis from stage 1 of the arcOGEN study.

Panoutsopoulou K, Southam L, Elliott KS, Wrayner N, Zhai G, Beazley C, Thorleifsson G, Arden NK, Carr A, et al (2010). Ann Rheum Dis, 70 (5):864-7. DOI: 10.1136/ard.2010.141473.
2010 | Material science
Self-sensing ionic polymer-metal composite actuating device with patterned surface electrodes.

Kruusamäe, Karl; Brunetto, Paola; Graziani, Salvatore; Punning, Andres; Di Pasquale, Giovanna; Aabloo, Alvo (2010). Polymer International, 59 (3):300-304. DOI: 10.1002/pi.2752.
2010 | Material science
Ionic polymer-metal composite mechanoelectrical transduction: review and perspectives.

Pugal, David; Jung, Kwangmok; Aabloo, Alvo; Kim, Kwang (2010). Polymer International, 59 (3):279-289. DOI: 10.1002/pi.2759.
2010 | Chemistry
Poly(ethylene oxide)-poly(butadiene) interpenetrated networks as electroactive polymers for actuators: a molecular dynamics study.

Brandell, Daniel; Kasemägi, Heiki; Aabloo, Alvo (2010). Electrochimica Acta, 55 (4):1333-1337. DOI: 10.1016/j.electacta.2009.04.070.
2010 | Chemistry
Force Field Generation and Molecular Dynamics Simulations of Li+ – Nafion.

Soolo, E; Brandell, D; Liivat, A; Tamm, T; Kasemägi, A; Aabloo, A (2010). Electrochimica Acta, 55 (4):2587-2591. DOI: 10.1016/j.electacta.2009.03.039.
2010 | Material science
Finite element modelling of ion transport in the electrolyte of a 3D-microbattery.

Zadin, Vahur; Kasemägi, Heiki; Aabloo, Alvo; Thomas, Josh; Brandell, Daniel (2010). Solid State Ionics, 192 (1):279-283. DOI: 10.1016/j.ssi.2010.02.007.
2010 | Materal science
Modelling electrode material utilization in the trench-model 3D-microbattery by finite element analysis.

Zadin, Vahur; Kasemägi, Heiki; Aabloo, Alvo; Brandell, Daniel (2010). Journal of Power Sources, 195 (18):6218-6224. DOI: 10.1016/j.jpowsour.2010.02.056.
2010 | Material science
Modelling the Nafion (R) diffraction profile by molecular dynamics simulation.

Brandell, Daniel; Karo, Jaanus; Thomas, John O (2010). Journal of Power Sources, 195 (18):5962-5965. DOI: 10.1016/j.jpowsour.2009.12.057.
2010 | Chemistry
Molecular Dynamics Modeling of Proton Transport in Nafion and Hyflon Nanostructures.

Karo, Jaanus; Aabloo, Alvo; Thomas, John O; Brandell, Daniel (2010). Journal of Chemical Physics B, 114 (18):6056–6064. DOI: 10.1021/jp903288y.
2010 | Medical science
Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.

Elks CE, Perry JR, Sulem P, Chasman DI, Franceschini N, He C, Lunetta KL, Visser JA, Byrne EM, Cousminer DL, Gudbjartsson DF et al (2010). Nature Genetics, 42 (12):1077–1085. DOI: 10.1038/ng.714.
2010 | Medical science
Hundreds of variants clustered in genomic loci and biological pathways affect human height.

Lango Allen H, Estrada K, Lettre G, Berndt SI, Weedon MN, Rivadeneira F, Willer CJ, Jackson AU, Vedantam S, Raychaudhuri S, Ferreira T, Wood AR, et al (2010). Nature, 467 (7317):832–838. DOI: 10.1038/nature09410.
2010 | Medical science
Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.

Heid IM, Jackson AU, Randall JC, Winkler TW, Qi L, Steinthorsdottir V, Thorleifsson G, Zillikens MC, Speliotes EK, Mägi R, Workalemahu T, et al (2010). Nature Genetics, 42 (11):949-60. DOI: 10.1038/ng.685.
2010 | Medical science
Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.

Speliotes EK, Willer CJ, Berndt SI, Monda KL, Thorleifsson G, Jackson AU, Lango Allen H, Lindgren CM, Luan J, Mägi R, et al (2010). Nature Genetics, 42 (11):937-48. DOI: 10.1038/ng.686.
2010 | Chemistry
Free Energy Calculations of Mutations Involving a Tightly Bound Water Molecule and Ligand Substitutions in a Ligand-Protein Complex.

Garcia-Sosa, Alfonso T; Mancera, Ricardo L (2010). Molecular Informatics, 29 (8-9):589-600. DOI: 10.1002/minf.201000007.
2010 | Biology
The genome-wide structure of the Jewish people.

Behar DM, Yunusbayev B, Metspalu M, Metspalu E, Rosset S, Parik J, Rootsi S, Chaubey G, Kutuev I, et al (2010). Nature, 466 (7303):238-242. DOI: 10.1038/nature09103.
2010 | Biology
Ancient human genome sequence of an extinct Palaeo-Eskimo.

Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, Moltke I, Metspalu M, Metspalu E, Kivisild T, et al (2010). Nature, 463 (7282):757-762. DOI: 10.1038/nature08835.
2010 | Medical science
A new highly penetrant form of obesity due to deletions on chromosome 16p11.2.

Walters RG, Jacquemont S, Valsesia A, de Smith AJ, Martinet D, Andersson J, Falchi M, Chen F, Andrieux J, et al (2010). Nature, 463 (7281):671-675. DOI: 10.1038/nature08727.
2010 | Astronomy
Dust-corrected surface photometry of M31 from Spitzer far-infrared observations.

Tempel, E; Tamm, A; Tenjes, P (2010). Astronomy & Astrophysics, 509, A91. DOI: 10.1051/0004-6361/200912186.
2010 | Biology
PlutoF - a Web Based Workbench for Ecological and Taxonomic Research, with an Online Implementation for Fungal ITS Sequences.

Abarenkov K, Tedersoo L, Nilsson RH, et al (2010). Evolutionary Bioinformatics, 6:189-196. DOI: 10.4137/EBO.S6271.
2010 | Chemistry
Poly(ethylene oxide)-poly(butadiene) interpenetrated networks as electroactive polymers for actuators: a molecular dynamics study.

Brandell, Daniel; Kasemägi, Heiki; Aabloo, Alvo (2010). Electrochimica Acta, 55 (4). DOI: 10.1016/j.electacta.2009.04.070.
2010 | Chemistry
Force Field Generation and Molecular Dynamics Simulations of Li+ – Nafion.

Soolo, Endel; Brandell, Daniel; Liivat, Anti; Tamm, Tamm; Kasemägi, Heiki; Aabloo, Alvo (2010). Electrochimica Acta, 55 (8). DOI: 10.1016/j.electacta.2009.03.039.

2009 | Biology
Genetic Structure of Europeans: A View from the North-East.

Nelis, Mari; Esko, Tõnu; Mägi, Reedik; Zimprich, Fritz, Zimprich, Alexander, et al (2009). PLoS ONE 4(5): e5472. doi:10.1371/journal.pone.0005472.
2009 | Chemistry
A Distributed Model of Ionomeric Polymer Metal Composite.

Punning, Andres; Johanson, Urmas; Anton, Mart; Aabloo, Alvo; Kruusmaa, Maarja (2009). Journal of Intelligent Material Systems and Structures, 20 (14). DOI: 10.1177/1045389X09337170.
2009 | Material science
Dynamic surface resistance model of IPMC.

Pugal, David; Aabloo, Alvo; Kim, Kwang J (2009). Proc. SPIE, 7289, 72891E. DOI: 10.1117/12.815824.
2009 | Chemistry
A Molecular dynamics study of the influence of side-chain length and spacing on lithium mobility in non-crystalline LiPF6-PEO; x10 and 30.

Karo, Jaanus; Brandell, Daniel (2009). Solid State Ionics, 180 (23-25). DOI: 10.1016/j.ssi.2009.07.009.
2009 | Chemistry
Importance of the initial stage: a comparative study of the development of polypyrrole properties.

Tamm, Tarmo; Raudsepp, Terje; Visk, U; Marandi, Margus; Tamm, Jüri (2009). 60th Annual Meeting of the International Society of Electrochemistry, Peking, China, 16-21 aug. 2009.
2009 | Chemistry
QSAR study of pharmacological permeabilities.

Karelson, Mati; Karelson, Gunnar; Tamm, Tarmo; Tulp, Indrek; Jänes, Jaak; Tämm, Kaido; Lomaka, Andre; Savchenko, Deniss; Dobchev, Dinitar (2009). Arkivoc (ii), 218-238.
2009 | Chemistry
Overoxidation of Polypyrrole, Role of Dopants: An Electrochemical, Theoretical, and FTIR Study.

Tamm, Tarmo; Visk, U; Raudsepp, Terje (2009). In: International workshop on electrochemistry of electroactive materials, Szczyrk, Poland.

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