Getting started

Overview

Information what the user needs to to in order to get an access to our products and services.Something like here you can find user guides, documentation and information about services and tools provided and hosted by UT HPC.

In case you have any problems or questions, please make sure to write to support@hpc.ut.ee.

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Documentation

Lumi

  1. HPC Quick Start
  2. Best practices
  3. Using modules
  4. File transfer to/out of the cluster
  5. GPU computing
  6. Job limits and queueing
  7. Python environments
  8. Monitoring and managing jobs
  9. GATK4 & Cromwell workflow

Rocket

  1. HPC Quick Start
  2. Best practices
  3. Using modules
  4. File transfer to/out of the cluster
  5. GPU computing
  6. Job limits and queueing
  7. Python environments
  8. Monitoring and managing jobs
  9. GATK4 & Cromwell workflow

Galaxy

  1. HPC Quick Start
  2. Best practices
  3. Using modules
  4. File transfer to/out of the cluster
  5. GPU computing
  6. Job limits and queueing
  7. Python environments
  8. Monitoring and managing jobs
  9. GATK4 & Cromwell workflow

Jupyter

  1. HPC Quick Start
  2. Best practices
  3. Using modules
  4. File transfer to/out of the cluster
  5. GPU computing
  6. Job limits and queueing
  7. Python environments
  8. Monitoring and managing jobs
  9. GATK4 & Cromwell workflow

R Studio

  1. HPC Quick Start
  2. Best practices
  3. Using modules
  4. File transfer to/out of the cluster
  5. GPU computing
  6. Job limits and queueing
  7. Python environments
  8. Monitoring and managing jobs
  9. GATK4 & Cromwell workflow

Kubernetes

  1. HPC Quick Start
  2. Best practices
  3. Using modules
  4. File transfer to/out of the cluster
  5. GPU computing
  6. Job limits and queueing
  7. Python environments
  8. Monitoring and managing jobs
  9. GATK4 & Cromwell workflow

Virtual Machines

  1. HPC Quick Start
  2. Best practices
  3. Using modules
  4. File transfer to/out of the cluster
  5. GPU computing
  6. Job limits and queueing
  7. Python environments
  8. Monitoring and managing jobs
  9. GATK4 & Cromwell workflow

Monitoring Services

  1. HPC Quick Start
  2. Best practices
  3. Using modules
  4. File transfer to/out of the cluster
  5. GPU computing
  6. Job limits and queueing
  7. Python environments
  8. Monitoring and managing jobs
  9. GATK4 & Cromwell workflow

Database Services

  1. HPC Quick Start
  2. Best practices
  3. Using modules
  4. File transfer to/out of the cluster
  5. GPU computing
  6. Job limits and queueing
  7. Python environments
  8. Monitoring and managing jobs
  9. GATK4 & Cromwell workflow

Web Services

  1. HPC Quick Start
  2. Best practices
  3. Using modules
  4. File transfer to/out of the cluster
  5. GPU computing
  6. Job limits and queueing
  7. Python environments
  8. Monitoring and managing jobs
  9. GATK4 & Cromwell workflow

Storage Related Services

  1. HPC Quick Start
  2. Best practices
  3. Using modules
  4. File transfer to/out of the cluster
  5. GPU computing
  6. Job limits and queueing
  7. Python environments
  8. Monitoring and managing jobs
  9. GATK4 & Cromwell workflow

Waldur ??

  1. HPC Quick Start
  2. Best practices
  3. Using modules
  4. File transfer to/out of the cluster
  5. GPU computing
  6. Job limits and queueing
  7. Python environments
  8. Monitoring and managing jobs
  9. GATK4 & Cromwell workflow

Tutorials

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Additional resources

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